Jatropha Genome Database

JcCB0056041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0056041.10 + phase: 1 /partial
         (318 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009276001 assembled CDS                                       357   5e-99
GSVIVT01009278001 assembled CDS                                       345   1e-95
GSVIVT01002251001 assembled CDS                                        83   2e-16
GSVIVT01000009001 assembled CDS                                        59   3e-09

>GSVIVT01009276001 assembled CDS
          Length = 387

 Score =  357 bits (915), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 161/289 (55%), Positives = 213/289 (73%)

Query: 28  NDVSSLSWDNLGFDHVPTDYMFVMKCCGGDKFSDGELKTFGEIELNPFSSVLNYGQGIIE 87
           ++ + + WDNLGF   PTDYM++ KC GGD F +G L  +G IEL+P + VLNYGQG+ E
Sbjct: 50  DEYADVDWDNLGFSLRPTDYMYITKCSGGDSFEEGHLSRYGNIELSPSAGVLNYGQGLFE 109

Query: 88  NMKAYKKDDGSILLFRPEANALRMTMGADRMCMPAPTFDQFLEAVKVTVSANRRWIPPPN 147
             KAY++++G + LFRP+ NA+RM  GA+RMCMP+P+  QF+EAVK T  AN+RWIPPP 
Sbjct: 110 GTKAYRRENGRLCLFRPDQNAIRMQAGAERMCMPSPSIHQFVEAVKQTAFANKRWIPPPG 169

Query: 148 KGFLHIRPLLIGSGPVLILTPSPEFTFLIYVTPVRNYFESGVEPINLVVEKEAHRAVPGG 207
           KG L+IRPLL+GSGPVL L P+PE TFLIY +PV NYF+ G+ P+NL ++ E HRA  GG
Sbjct: 170 KGSLYIRPLLMGSGPVLGLGPAPECTFLIYASPVGNYFKEGLAPLNLFIDDEYHRATRGG 229

Query: 208 VGSIKAIGNYAMIVXXXXXXXXNGFHGVLYLDAVHNKYLEEVSAANIFVVKDKTICTPAL 267
            G +K I NY+ ++         GF  VLYLD+V+ K +EEVS+ N+F+VKD  I TPA 
Sbjct: 230 AGGVKTITNYSPVLKALTRAKSRGFSDVLYLDSVYKKNIEEVSSCNVFIVKDNVISTPAT 289

Query: 268 RGTILPGITRESVIDIARNLRFQVEEGRVSVEELFNADEVFCTGTAVGL 316
            GTIL G+TR+S++DIA +  +QV+E  + VEE+  ADEVFCTGTAVG+
Sbjct: 290 GGTILEGVTRKSIVDIALDHGYQVKEQCIPVEEVMEADEVFCTGTAVGV 338


>GSVIVT01009278001 assembled CDS
          Length = 387

 Score =  345 bits (886), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 159/289 (55%), Positives = 210/289 (72%)

Query: 28  NDVSSLSWDNLGFDHVPTDYMFVMKCCGGDKFSDGELKTFGEIELNPFSSVLNYGQGIIE 87
           ++ + + WDNLGF  +PTDYM+  KC  G  F +G L  +G IEL+P + VLNYGQG+ E
Sbjct: 50  DEYADVDWDNLGFGLIPTDYMYTTKCSEGGNFEEGHLSRYGNIELSPSAGVLNYGQGLFE 109

Query: 88  NMKAYKKDDGSILLFRPEANALRMTMGADRMCMPAPTFDQFLEAVKVTVSANRRWIPPPN 147
             KAY++++G + LFRP+ NA+RM +GA+RMCMP+P+   F+EAVK T  AN+RWIPPP 
Sbjct: 110 GTKAYRRENGRLCLFRPDQNAIRMQVGAERMCMPSPSIHHFVEAVKQTALANKRWIPPPG 169

Query: 148 KGFLHIRPLLIGSGPVLILTPSPEFTFLIYVTPVRNYFESGVEPINLVVEKEAHRAVPGG 207
           KG L+IRPLL+GSGPVL L P+PE TFLIY +PV NYF+    P+NL ++ E HRA  GG
Sbjct: 170 KGSLYIRPLLMGSGPVLGLGPAPECTFLIYASPVGNYFKQVSAPLNLFIDDEYHRATRGG 229

Query: 208 VGSIKAIGNYAMIVXXXXXXXXNGFHGVLYLDAVHNKYLEEVSAANIFVVKDKTICTPAL 267
            G +KAI NY+ ++         GF  VL+LD+V+ K +EEVS+ NIF+VKD  I TPA 
Sbjct: 230 AGGVKAITNYSPVLKAQSRAKSRGFSDVLFLDSVNKKNIEEVSSCNIFIVKDNVISTPAT 289

Query: 268 RGTILPGITRESVIDIARNLRFQVEEGRVSVEELFNADEVFCTGTAVGL 316
            GTIL G+TR+S+IDIA +  +QV+E  + VEE+  ADEVFCTGTAVG+
Sbjct: 290 GGTILEGVTRKSIIDIALDHGYQVKERCIPVEEVMEADEVFCTGTAVGV 338


>GSVIVT01002251001 assembled CDS
          Length = 108

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 49/57 (85%)

Query: 262 ICTPALRGTILPGITRESVIDIARNLRFQVEEGRVSVEELFNADEVFCTGTAVGLLP 318
           I TP+++GTILPGITR+S+ID+AR+  FQVEE  VSV+EL +ADEVFCTGTAV + P
Sbjct: 4   ISTPSIKGTILPGITRKSIIDVARSQGFQVEERPVSVDELLDADEVFCTGTAVVVSP 60


>GSVIVT01000009001 assembled CDS
          Length = 975

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 104/249 (41%), Gaps = 21/249 (8%)

Query: 75  FSSVLNYGQGIIENMKAYKKDDGSILLFRPEANALRMTMGADRMCMP-APTFDQFLEAVK 133
           F SV+  G  + E ++ Y   +G I  F+ E +  RM   A  +     PT ++   A+ 
Sbjct: 701 FDSVVQGGDSVWEGLRIY---NGKI--FKLEEHLDRMFDSAKALAFNNVPTREEIKAAIF 755

Query: 134 VTVSANRRWIPPPNKGFLHIRPLLIGSGPVLILTPSPEFTF----LIYVTPVRNYFESGV 189
            T++ N  +         HIR L +  G  +    SP F      LI +   +       
Sbjct: 756 TTLNRNGMF------DNTHIR-LSLTRGKKVTSGMSPAFNLYGCTLIVLAEWKPPVYDNT 808

Query: 190 EPINLVVEKEAHRAVPGGVGSIKAIGNYAMIVXXXXXXXXNGFHGVLYLDAVHNKYLEEV 249
           + I LV      R  P  + S     N    +              + LD   + Y+ E 
Sbjct: 809 KGITLVTAT-TRRNSPNNLDSKIHHNNLLNNILAKIEGNNANADDAIMLDK--DGYVSET 865

Query: 250 SAANIFVVKDKTICTPALRGTILPGITRESVIDIARNLRFQVEEGRVSVEELFNADEVFC 309
           +A NIF+VK   + TP      LPGITR +V+D+    +F + E R+S+ E   ADEV+ 
Sbjct: 866 NATNIFLVKKGHVLTPH-ADYCLPGITRATVMDLVVKEKFPLVERRISLSEFHTADEVWT 924

Query: 310 TGTAVGLLP 318
           TGT   L P
Sbjct: 925 TGTMGELSP 933