Jatropha Genome Database

JcCB0055221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0055221.20 + phase: 0 /pseudo
         (290 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032967001 assembled CDS                                       147   7e-36

>GSVIVT01032967001 assembled CDS
          Length = 289

 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 80/100 (80%), Positives = 87/100 (87%)

Query: 190 FSQRKAELVVPEDGKPSWTKRLLLDRNLLCSKIREEADELCRTIEENEHSARTASEMGDV 249
            SQRKAE+  P++GKPSWTKRLLLD  LLCSKIREEADELCRT EENE  +RTASEM DV
Sbjct: 189 ISQRKAEVASPQNGKPSWTKRLLLDDKLLCSKIREEADELCRTHEENEDKSRTASEMADV 248

Query: 250 LYHTMVLLALKDVKIEDVLDVLRRRFSQSGIEEKKSRGQQ 289
           LYHTMVLL+LKDVK+E+VL VLR RFSQSGIEEKKSR  Q
Sbjct: 249 LYHTMVLLSLKDVKMEEVLQVLRHRFSQSGIEEKKSRATQ 288



 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/107 (64%), Positives = 84/107 (78%), Gaps = 3/107 (2%)

Query: 1   MAASSLHCIQSLRFSSRSCAFFPHIG-FRGDDDNKRKNSRLILASVKKSDKDLSVESKVE 59
           MA S  HC+QSLR + R+  F  ++  +R  D+   K+   + AS KK  +DLS+E+KVE
Sbjct: 1   MAVSYSHCLQSLRVTPRTRLFVSNVDCWR--DNRIMKSYSPVSASSKKPHQDLSLEAKVE 58

Query: 60  TLLDSVKWDDKGLAVAIAQNIDTGAILMQGFVNRDALATTISSRKAT 106
           TLLDSVKWDDKGLAVAIAQN+DTGA+LMQGFVNRDALATTISS+KAT
Sbjct: 59  TLLDSVKWDDKGLAVAIAQNVDTGAVLMQGFVNRDALATTISSQKAT 105