Jatropha Genome Database

JcCB0053361.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0053361.20 + phase: 0 /partial
         (169 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018382001 assembled CDS                                       233   4e-62
GSVIVT01013241001 assembled CDS                                       213   5e-56

>GSVIVT01018382001 assembled CDS
          Length = 403

 Score =  233 bits (593), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 116/148 (78%), Positives = 128/148 (86%), Gaps = 4/148 (2%)

Query: 22  RRFPLRHGVRCNVVEPLNFDNGKPCVPLLSPSAQSFPSFLASNTDLESCIANKHYTRLRI 81
            R   R+ VRCN+VEP+ F+NG+P +P+L     + P+FL+S  D+E  I NK+ TRLRI
Sbjct: 34  HRLSPRNTVRCNLVEPVKFNNGRPFIPVLREP--TLPNFLSSK-DMEETI-NKNDTRLRI 89

Query: 82  FSGTANPALSQEIACYMGLELGKIKIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANEN 141
           FSGTANPALSQEIACYMGLELGKI IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANEN
Sbjct: 90  FSGTANPALSQEIACYMGLELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANEN 149

Query: 142 LMELLIMIDACRRASAKNITAVIPYFGY 169
           LMELLIMIDACRRASAKNITAVIPYFGY
Sbjct: 150 LMELLIMIDACRRASAKNITAVIPYFGY 177


>GSVIVT01013241001 assembled CDS
          Length = 397

 Score =  213 bits (541), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 103/147 (70%), Positives = 123/147 (83%), Gaps = 4/147 (2%)

Query: 23  RFPLRHGVRCNVVEPLNFDNGKPCVPLLSPSAQSFPSFLASNTDLESCIANKHYTRLRIF 82
           RF +   ++C++ E L F+NGKPCVP+L+   ++FPSFL S   +E  ++ ++  RL+IF
Sbjct: 35  RFQVASVIKCDMNESLKFENGKPCVPVLND--RTFPSFLESRR-MEKSVS-RNSDRLKIF 90

Query: 83  SGTANPALSQEIACYMGLELGKIKIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENL 142
           SGTANP LS+EIA YMG ELGKI IKRFADGEIYVQL+ESVRGCDVYLVQPTCPPANENL
Sbjct: 91  SGTANPTLSKEIAWYMGKELGKINIKRFADGEIYVQLEESVRGCDVYLVQPTCPPANENL 150

Query: 143 MELLIMIDACRRASAKNITAVIPYFGY 169
           MELLIMIDACRRASAK +TAV+PYFGY
Sbjct: 151 MELLIMIDACRRASAKTVTAVVPYFGY 177