Jatropha Genome Database

JcCB0053231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0053231.10 - phase: 0 
         (275 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025217001 assembled CDS                                       369   e-103
GSVIVT01033673001 assembled CDS                                       307   3e-84
GSVIVT01005048001 assembled CDS                                       292   9e-80
GSVIVT01005049001 assembled CDS                                       262   1e-70
GSVIVT01033852001 assembled CDS                                       202   2e-52

>GSVIVT01025217001 assembled CDS
          Length = 274

 Score =  369 bits (947), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/276 (63%), Positives = 215/276 (77%), Gaps = 3/276 (1%)

Query: 1   MRKLAFKILFFTRFIFISLLLHTLPISSQEIEDEKDFDYYEG-EKGPSRWGELHPEWSAC 59
           M KL   IL  +   FI L+LH  P  SQE+EDEK+FDY +G +KGP +WGE+H EWS C
Sbjct: 1   MEKLMTHILLCS--FFIVLVLHACPAISQEVEDEKEFDYEKGSDKGPDKWGEIHEEWSTC 58

Query: 60  NNGSMQSPIDLLNERVEVVSHLGKLKREYKSSNATLKNRGHDMMMEWENGAGITEINGTE 119
            +G+MQSPIDLL+ERV+VVSHLG+L+R YK S ATLKNRGHDM + WE  AG  +INGT+
Sbjct: 59  KHGNMQSPIDLLHERVQVVSHLGRLQRSYKPSQATLKNRGHDMKLSWEGDAGSIQINGTK 118

Query: 120 YILKQCHWHSPSEHSVNGVRFALELHMVHESLDGKVAVIGVMYIIGRPDSFLSSVDKHLR 179
           Y LKQCHWHSPSEH+VNG RF LELHM+HE+  GK +V+G+MY IGR DSFLS++  HL 
Sbjct: 119 YELKQCHWHSPSEHTVNGKRFDLELHMLHETPSGKTSVVGIMYKIGRADSFLSTLTDHLE 178

Query: 180 SVAGTRKLQTVVGMVNPKSIKLRSRKYYRYKGSLTVPPCTENVLWTIVTKVRTVSREQVR 239
           +++ +   +  VG+V+P+ IK+ SRKYYRY GSLT PPCTE+V+WTIV KVRTV+REQV 
Sbjct: 179 ALSDSSDQERDVGVVDPRHIKIGSRKYYRYMGSLTTPPCTEDVIWTIVNKVRTVTREQVN 238

Query: 240 LLRVAVHDESDTNARPIQLMNGRSVQLYKPESTDNN 275
           LLRVAVHD+S +NARPIQ +N RSV  Y+P   D N
Sbjct: 239 LLRVAVHDDSGSNARPIQPINRRSVHFYRPRVEDKN 274


>GSVIVT01033673001 assembled CDS
          Length = 270

 Score =  307 bits (787), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 145/251 (57%), Positives = 189/251 (75%), Gaps = 2/251 (0%)

Query: 21  LHTLPISSQEIEDEKDFDYYEG-EKGPSRWGELHPEWSACNNGSMQSPIDLLNERVEVVS 79
           +H+  I +QE+EDE++F+Y EG EKGP  WGEL  EW+ACNNG +QSPIDL N+RV+V+ 
Sbjct: 21  VHSTRIIAQEVEDEREFEYIEGSEKGPKHWGELKEEWAACNNGDLQSPIDLSNQRVKVIP 80

Query: 80  HLGKLKREYKSSNATLKNRGHDMMMEWENGAGITEINGTEYILKQCHWHSPSEHSVNGVR 139
            LG LKR YK  NAT+KNRGHD+ ++W   AG   INGTEY L+Q HWH+PSEHS+NG R
Sbjct: 81  KLGDLKRNYKLCNATVKNRGHDISLQWVGDAGSIRINGTEYKLQQGHWHAPSEHSINGRR 140

Query: 140 FALELHMVHESLDGKVAVIGVMYIIGRPDSFLSSVDKHLRSVAGTRKLQTVVGMVNPKSI 199
           + LELHMVH S D  +AV+G++Y  G+PD FLS +  ++ S+A  +  Q  +G+++P  I
Sbjct: 141 YDLELHMVHVSPDNNIAVVGLIYKTGQPDKFLSKMMSNITSMA-DKMEQRKMGVIHPGDI 199

Query: 200 KLRSRKYYRYKGSLTVPPCTENVLWTIVTKVRTVSREQVRLLRVAVHDESDTNARPIQLM 259
           K+  RKYY+Y GSLTVPPCTE V W I  K+RTVSREQV+ LR+AVHD ++ NARP+Q +
Sbjct: 200 KMGGRKYYKYMGSLTVPPCTEGVTWIINKKIRTVSREQVKQLRLAVHDYAEMNARPVQPL 259

Query: 260 NGRSVQLYKPE 270
           N R VQLY P+
Sbjct: 260 NLREVQLYGPK 270


>GSVIVT01005048001 assembled CDS
          Length = 276

 Score =  292 bits (748), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 140/244 (57%), Positives = 178/244 (72%), Gaps = 3/244 (1%)

Query: 27  SSQEIEDEKDFDYYEGE-KGPSRWGELHPEWSACNNGSMQSPIDLLNERVEVVSHLGKLK 85
           S  E EDE  F Y E   KGP RWG+++P+W AC NG+MQSPIDLL+ RV+V+ +L KLK
Sbjct: 28  SESETEDETQFSYIEDTGKGPKRWGQINPDWKACGNGAMQSPIDLLDARVQVLPNLEKLK 87

Query: 86  REYKSSNATLKNRGHDMMMEWENGAGITEINGTEYILKQCHWHSPSEHSVNGVRFALELH 145
           R+YK + A +KNRGHD+ +EW+  AG   INGT + L+QCHWHSPSEH+ NG R+ LELH
Sbjct: 88  RDYKPAPAVVKNRGHDVTVEWKGYAGKININGTYFKLQQCHWHSPSEHTFNGSRYNLELH 147

Query: 146 MVHESLDGKVAVIGVMYIIGRPDSFLSSVDKHLRSVAGTRKLQTVVGMVNPKSIKLRSRK 205
           ++H S D K+AVIG+ Y  GR D FL+ + +H+ S+    + +  +G+VNP  IK  SRK
Sbjct: 148 VIHLSSDEKIAVIGITYKYGRADPFLTRMLRHIDSLPVGEEKE--LGIVNPGDIKFGSRK 205

Query: 206 YYRYKGSLTVPPCTENVLWTIVTKVRTVSREQVRLLRVAVHDESDTNARPIQLMNGRSVQ 265
           YYRY GSLTVPPCTE V+WTI  KVRT +REQVR LR AV D  + NARP Q ++GR+V 
Sbjct: 206 YYRYIGSLTVPPCTEGVIWTISKKVRTATREQVRALRKAVQDGYEANARPSQEVDGRTVL 265

Query: 266 LYKP 269
           LYKP
Sbjct: 266 LYKP 269


>GSVIVT01005049001 assembled CDS
          Length = 271

 Score =  262 bits (670), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 133/267 (49%), Positives = 174/267 (65%), Gaps = 10/267 (3%)

Query: 6   FKILFFTRF-IFISLLLHTLPISSQEIEDEKDFDYYEG-EKGPSRWGELHPEWSACNNGS 63
           F I  F+ + +F+SL      IS   +EDE +F Y EG E GP +WG +  EW  C  G 
Sbjct: 4   FPITVFSEYHVFVSLSAQHF-IS---MEDESEFSYIEGSETGPEKWGTIKAEWKTCGKGK 59

Query: 64  MQSPIDLLNERVEVVSHLGKLKREYKSSNATLKNRGHDMMMEWENGAGITEINGTEYILK 123
            QSPIDL N RV +    G+LKR+Y+ ++A LKNRGHD+ +EW+  AG  +++G  + L+
Sbjct: 60  RQSPIDLRNRRVSIFPDFGQLKRKYRPAHAVLKNRGHDVAVEWKGNAGKIKLHGVHFKLE 119

Query: 124 QCHWHSPSEHSVNGVRFALELHMVHESLDGKVAVIGVMYIIGRPDSFLSSVDKHLRSV-A 182
           Q HWH+PSEH+VNG  F +ELH+VH+S  GK+AVIG  + +G PD FL+ +  H+  + A
Sbjct: 120 QLHWHTPSEHTVNGTSFQMELHLVHKSARGKIAVIGKTFKLGPPDPFLAKMIDHVTGIPA 179

Query: 183 GTRKLQTVVGMVNPKSIKLRSRKYYRYKGSLTVPPCTENVLWTIVTKVRTVSREQVRLLR 242
           G  K    +G+V+   IK   RKYYRY GSLT PPCTE V+WTI  KV TVS+EQV  LR
Sbjct: 180 GEEK---DIGIVDANDIKHWGRKYYRYIGSLTTPPCTEGVIWTISKKVNTVSKEQVESLR 236

Query: 243 VAVHDESDTNARPIQLMNGRSVQLYKP 269
             VHD  + NARP Q +NGR V LY P
Sbjct: 237 RVVHDGHEGNARPAQRLNGRPVWLYIP 263


>GSVIVT01033852001 assembled CDS
          Length = 279

 Score =  202 bits (513), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/277 (37%), Positives = 163/277 (58%), Gaps = 19/277 (6%)

Query: 4   LAFKILFFTRFIFISLLLHTLPISSQEIEDEKDFDYYEGEKGPSRWGELHPEWSACNNGS 63
           LAF +L    F F +  L  +P S            Y G+ GP+ WG+LHP++  C  G 
Sbjct: 14  LAFALLHVPAFAFTTEELEEVPFS------------YAGQMGPANWGKLHPQFQECVVGK 61

Query: 64  MQSPIDLLNERVEVVSHLGKLKREYKSSNATLKNRGHDMMMEWENGAGITEINGTEYILK 123
            QSP+D++  + E+  +L  L R Y+   +TL N G ++ + ++   G+  ++G  Y LK
Sbjct: 62  SQSPVDIITNKTELNPNLKPLSRNYRPGKSTLVNNGFNVGVRFDEDVGVLLVDGKNYSLK 121

Query: 124 QCHWHSPSEHSVNGVRFALELHMVHESLDGKVAVIGVMYIIGRPDSFLSSVDKHLRSV-- 181
           Q HWHSPSEH ++G+++  ELH+VH + DG +AV+G++Y  G  D  LS +   L  +  
Sbjct: 122 QMHWHSPSEHRIDGLQYPAELHLVHRTDDGNIAVVGILYQYGDADPLLSKLKNKLDELAK 181

Query: 182 ---AGTRKLQTVVGMVNPKSIKLRSRKYYRYKGSLTVPPCTENVLWTIVTKVRTVSREQV 238
              A   + Q  +G ++ K I+  +R+YYRY GSLT PPC+E V W I+ K+R +S++QV
Sbjct: 182 DVCASNEQSQVSLGTMDTKLIRRNTRRYYRYMGSLTTPPCSEKVAWHILGKIRDISKDQV 241

Query: 239 RLLRVAVHDESDTNARPIQLMNGRSVQLYK--PESTD 273
             L+  ++ +   N+RP+Q +NGR +QLY   P+ +D
Sbjct: 242 AALKAPLNSDCKDNSRPLQPLNGRRIQLYDETPDGSD 278