Jatropha Genome Database

JcCB0053181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0053181.10 + phase: 0 /partial
         (490 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029151001 assembled CDS                                       535   e-152

>GSVIVT01029151001 assembled CDS
          Length = 863

 Score =  535 bits (1378), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 266/423 (62%), Positives = 310/423 (73%), Gaps = 13/423 (3%)

Query: 70  IYMIWGSNTSLGKTLVSTGLASSFLLSPPPAXXXXXXXXXXXFLYLKPVQTGFPSDSDSH 129
           IY IW SNT LGKTLVSTGLA++ LLSP P+           F+Y+KPVQTGFPSDSDS 
Sbjct: 54  IYTIWASNTGLGKTLVSTGLAAATLLSPFPSSDSAK------FIYIKPVQTGFPSDSDSA 107

Query: 130 FVFSKLSSLASRYNPPFXXXXXXXXXXXXXXXXXXFGGCFETNEFKYGMYNLNFNEKKKV 189
           FVF K S L  R  P F                    G     E +  + +L   E++++
Sbjct: 108 FVFRKFSQLVLRRRPSFAVSASNHVLKASASAAEAVLGFGSEGEGE--LRDLGAYEERRL 165

Query: 190 LRDE---AGVSELICETLYAWKEAVSPHLAAERENGVVEDSAVMEMLEQCLSNELKFEGE 246
           L +E      SEL C+T+YAW+EA+SPHLA ERE G V D  ++E+L +CL   +  E  
Sbjct: 166 LGEEWAAGAASELTCKTMYAWREAISPHLAVEREGGAVPDKVLLEVLGRCL--RIGSEDG 223

Query: 247 NETMDAFCVVETAGGVASPGPSGTLQCDLYRPFRFPGVLVGDGRLGGISGTISAYESLKL 306
              MD + VVETAGGVASPGPSGTLQCDLYRPFR P +LVGDGRLGGISGTISAYESLKL
Sbjct: 224 RGRMDVWSVVETAGGVASPGPSGTLQCDLYRPFRLPAILVGDGRLGGISGTISAYESLKL 283

Query: 307 RGYDIVAVVFEDHGLVNEVPLLSYLQNRXXXXXXXXXXQDMSNDLVEWFGSSSEPFNSLQ 366
           RGYD+VA+V EDHGLVNEVPLLSYL NR          QD S++L+EWF  S   F+SL+
Sbjct: 284 RGYDVVAIVIEDHGLVNEVPLLSYLGNRVPVLVLPPVPQDPSDNLMEWFDKSQAVFSSLK 343

Query: 367 GILLSAFSERLRRLKEMPKKATDVFWWPFTQHKLVPEETVTVIDSRCGENFAVYKAQNKD 426
            I+LS +SER++R  +MPK+A D+FWWPFTQHKLVPEETVTVIDSRCGENF+V+K QN D
Sbjct: 344 EIMLSVYSERIQRFHDMPKRAGDIFWWPFTQHKLVPEETVTVIDSRCGENFSVHKVQNND 403

Query: 427 FITEQFDACASWWTQGPNATLQIELARDMGYAAGRFGHVMFPENVYEPALKCAELLLEGV 486
           FI +QFDACASWWTQGP+ATLQIELARD+GYAA RFGHVMFPENVYEPAL+CAELLLEGV
Sbjct: 404 FIAQQFDACASWWTQGPDATLQIELARDVGYAAARFGHVMFPENVYEPALECAELLLEGV 463

Query: 487 GKG 489
           GKG
Sbjct: 464 GKG 466