Jatropha Genome Database

JcCB0052901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0052901.10 + phase: 0 /pseudo/partial
         (295 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019875001 assembled CDS                                       447   e-126
GSVIVT01010658001 assembled CDS                                       350   6e-97
GSVIVT01008388001 assembled CDS                                       236   8e-63
GSVIVT01018566001 assembled CDS                                       228   4e-60
GSVIVT01018434001 assembled CDS                                       182   2e-46
GSVIVT01010662001 assembled CDS                                       167   6e-42
GSVIVT01015848001 assembled CDS                                       129   2e-30
GSVIVT01023491001 assembled CDS                                       118   4e-27
GSVIVT01023489001 assembled CDS                                        57   8e-09
GSVIVT01008389001 assembled CDS                                        52   4e-07

>GSVIVT01019875001 assembled CDS
          Length = 464

 Score =  447 bits (1150), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/253 (83%), Positives = 222/253 (87%)

Query: 1   MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTVGLGQDCMAFCSEVEDVISMSLTA 60
           M KNVGILAMDIYFPPTCVQQEALE HDGASKGKYT+GLGQDCMAFCSEVEDVISMSLT 
Sbjct: 1   MTKNVGILAMDIYFPPTCVQQEALEVHDGASKGKYTIGLGQDCMAFCSEVEDVISMSLTV 60

Query: 61  VSSLLEKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDVEGVDSTNACYGG 120
           V+SLLEKY IDPKQIGRLEVGSETVIDKSKSIKTFLMQIFE+ GN D+EGVDS+NACYGG
Sbjct: 61  VTSLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEECGNNDIEGVDSSNACYGG 120

Query: 121 TAALLNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARXXXXXXXXXXXXXXXXXXXFESK 180
           TAAL NCVNWVES+SWDGRYGLVVCTDSAVYAEGPAR                   FESK
Sbjct: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPIAFESK 180

Query: 181 FRGSHMSHTYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKNFCAKYEKFKGKQFSISD 240
            RGSHMSH YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK  C+KYEK +GKQFSI+D
Sbjct: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKLLCSKYEKLEGKQFSIAD 240

Query: 241 AEYFVFHSPYNKV 253
           A+YFVFHSPYNK+
Sbjct: 241 ADYFVFHSPYNKL 253


>GSVIVT01010658001 assembled CDS
          Length = 461

 Score =  350 bits (897), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 165/202 (81%), Positives = 177/202 (87%)

Query: 3   KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTVGLGQDCMAFCSEVEDVISMSLTAVS 62
           KNVGILAM+IYFP TCVQQEALEAHDGASKGKYT+GLGQDC AFC+EVEDVISMSLTAV+
Sbjct: 6   KNVGILAMEIYFPRTCVQQEALEAHDGASKGKYTIGLGQDCTAFCTEVEDVISMSLTAVA 65

Query: 63  SLLEKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDVEGVDSTNACYGGTA 122
           SLLEKY IDPKQIGRLEVGSETVIDKSKSIKTFLMQIFE+ GNTD+EGVDSTNACYGGTA
Sbjct: 66  SLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEESGNTDIEGVDSTNACYGGTA 125

Query: 123 ALLNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARXXXXXXXXXXXXXXXXXXXFESKFR 182
           AL NC+NWVES+SWDGR+GLVVCTD+AVYAEGPAR                   FESKF+
Sbjct: 126 ALFNCINWVESSSWDGRHGLVVCTDNAVYAEGPARPTGGAAAIAMLVGPGAPIAFESKFK 185

Query: 183 GSHMSHTYDFYKPNLASEYPVV 204
           GSHMSH YDFYKPNLASEYPV+
Sbjct: 186 GSHMSHAYDFYKPNLASEYPVM 207


>GSVIVT01008388001 assembled CDS
          Length = 322

 Score =  236 bits (603), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 118/146 (80%)

Query: 57  SLTAVSSLLEKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDVEGVDSTNA 116
           SLT V+SLLEKY IDPKQIGRLEVGSE VIDKSKSIKTFLMQIFE+ GN D+EGVDS+NA
Sbjct: 172 SLTVVTSLLEKYGIDPKQIGRLEVGSEIVIDKSKSIKTFLMQIFEECGNNDIEGVDSSNA 231

Query: 117 CYGGTAALLNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARXXXXXXXXXXXXXXXXXXX 176
           CYGGTAAL NCVNWVES+SWDGRYGLVVCTDSAVYAEGP R                   
Sbjct: 232 CYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPTRPTGGAAAIAMLEGPDAPIA 291

Query: 177 FESKFRGSHMSHTYDFYKPNLASEYP 202
           FESK RGSHMSH YDFYKPNLASEYP
Sbjct: 292 FESKLRGSHMSHAYDFYKPNLASEYP 317


>GSVIVT01018566001 assembled CDS
          Length = 147

 Score =  228 bits (580), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 108/129 (83%), Positives = 120/129 (93%), Gaps = 4/129 (3%)

Query: 22  EALEAHDGASKGKYTVGLGQDCMAFCSEVEDVISMSLTAVSSLLEKYNIDPKQIGRLEVG 81
           E LEAHDGA+KGKYT+GLGQDCMAFC+EVEDVISMSLTAV+SLLEKY IDPKQIG LE+G
Sbjct: 23  ETLEAHDGATKGKYTIGLGQDCMAFCTEVEDVISMSLTAVASLLEKYEIDPKQIGWLEIG 82

Query: 82  SETVIDKSKSIKTFLMQIFEKYGNTDVEGVDSTNACYGGTAALLNCVNWVESNSWDGRYG 141
           SETVIDKSKSIKTFLMQ FE+ GNTD++GVDSTNACYGGTA    C+NWVES+SWDGRYG
Sbjct: 83  SETVIDKSKSIKTFLMQNFEESGNTDIKGVDSTNACYGGTA----CINWVESSSWDGRYG 138

Query: 142 LVVCTDSAV 150
           L+VCTD+AV
Sbjct: 139 LLVCTDNAV 147


>GSVIVT01018434001 assembled CDS
          Length = 136

 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/115 (73%), Positives = 94/115 (81%)

Query: 74  QIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDVEGVDSTNACYGGTAALLNCVNWVES 133
           +IGRLEVGSETVIDKSKSIKTFLMQIFE+ GNTD+EGVDSTNACYGGTAAL NC+NWVES
Sbjct: 21  KIGRLEVGSETVIDKSKSIKTFLMQIFEESGNTDIEGVDSTNACYGGTAALFNCINWVES 80

Query: 134 NSWDGRYGLVVCTDSAVYAEGPARXXXXXXXXXXXXXXXXXXXFESKFRGSHMSH 188
           +SWDGR+GLVVCT++AVYAEGPAR                   FESKF+GSHMSH
Sbjct: 81  SSWDGRHGLVVCTNNAVYAEGPARPTGGAAAIAMLVGPGAPIAFESKFKGSHMSH 135


>GSVIVT01010662001 assembled CDS
          Length = 117

 Score =  167 bits (423), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 77/108 (71%), Positives = 85/108 (78%)

Query: 97  MQIFEKYGNTDVEGVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVVCTDSAVYAEGPA 156
           MQIFE+ GNTD+EGVDSTNACYGGTAAL NC+NWVES+SWDGR+ LVVCTD+AVYAEGPA
Sbjct: 1   MQIFEESGNTDIEGVDSTNACYGGTAALFNCINWVESSSWDGRHELVVCTDNAVYAEGPA 60

Query: 157 RXXXXXXXXXXXXXXXXXXXFESKFRGSHMSHTYDFYKPNLASEYPVV 204
           R                   FESKF+GSHMSH YDFYKPNLASEYPV+
Sbjct: 61  RPTGGAAAIAMLVGPGAPIAFESKFKGSHMSHAYDFYKPNLASEYPVM 108


>GSVIVT01015848001 assembled CDS
          Length = 100

 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 74/103 (71%), Gaps = 23/103 (22%)

Query: 1   MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTVGLGQDCMAFCSEVEDVISMSLTA 60
           MAKNVGILAMDIYFPP+CVQQ                       AFCSEVEDVISMS T 
Sbjct: 1   MAKNVGILAMDIYFPPSCVQQ-----------------------AFCSEVEDVISMSSTV 37

Query: 61  VSSLLEKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKY 103
           V+SLLEKY ID KQI +LEVG+ETVIDKSKSIKTFLMQIFE +
Sbjct: 38  VTSLLEKYGIDTKQISQLEVGNETVIDKSKSIKTFLMQIFEVF 80


>GSVIVT01023491001 assembled CDS
          Length = 69

 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/68 (80%), Positives = 61/68 (89%)

Query: 186 MSHTYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKNFCAKYEKFKGKQFSISDAEYFV 245
           MSH YDF+KPNLAS Y VVDGKLSQTCYLMALDSC K  C+KYEK +GKQFSI+DA+YFV
Sbjct: 1   MSHAYDFHKPNLASGYLVVDGKLSQTCYLMALDSCNKLLCSKYEKLEGKQFSIADADYFV 60

Query: 246 FHSPYNKV 253
           FHSPYNK+
Sbjct: 61  FHSPYNKL 68


>GSVIVT01023489001 assembled CDS
          Length = 33

 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 25/33 (75%), Positives = 28/33 (84%)

Query: 97  MQIFEKYGNTDVEGVDSTNACYGGTAALLNCVN 129
           MQIFE+ GN D+EGVDS+NACYGGTA   NCVN
Sbjct: 1   MQIFEECGNNDIEGVDSSNACYGGTATSFNCVN 33


>GSVIVT01008389001 assembled CDS
          Length = 107

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/27 (77%), Positives = 26/27 (96%)

Query: 227 KYEKFKGKQFSISDAEYFVFHSPYNKV 253
           +YEK +GKQFSI+DA+YFVFHSPYNK+
Sbjct: 9   RYEKLEGKQFSIADADYFVFHSPYNKL 35