Jatropha Genome Database

JcCB0052881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0052881.10 + phase: 0 /pseudo/partial
         (283 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030280001 assembled CDS                                       379   e-106

>GSVIVT01030280001 assembled CDS
          Length = 1134

 Score =  379 bits (974), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/257 (73%), Positives = 213/257 (82%), Gaps = 3/257 (1%)

Query: 15   ATKQLDMDKAIKKALQDAGIQEREVTPFLRVRVVGLT--SYHGKAVAKEGLITIWSPTEK 72
            A +Q D+ K+I+ AL+ AG+  REVTPF+RVRVVGLT  SY GK   KEGLITIW+PTEK
Sbjct: 862  AIRQSDLQKSIEMALEGAGLSTREVTPFMRVRVVGLTCKSYEGKIHHKEGLITIWNPTEK 921

Query: 73   QRNELVEGQAYAIAGLLPVNADSNTLYLQARGSTTKWEPLSPLAIKNFQPFFNPRVSVLM 132
            Q+ ELVEGQAYA+AGL+P+N+DS TLYLQARGSTTKW PLSPLAI++F+PF NPR SVL+
Sbjct: 922  QQFELVEGQAYAVAGLMPLNSDSETLYLQARGSTTKWNPLSPLAIEHFEPFLNPRKSVLL 981

Query: 133  SNLGEVPLSSEFDIAAYVVYVGEVYTTAQWKKQWVFVTDCSISALWSEELSNSLLAISFC 192
            SNLGE+PLSSEFDIAA VVYVGEVYT A  KKQWVFVTD S+S L SEE SN LLAISFC
Sbjct: 982  SNLGEIPLSSEFDIAALVVYVGEVYTAAHQKKQWVFVTDGSVSELGSEEASNCLLAISFC 1041

Query: 193  SPYIDDDSFTPINYNLEGSAVGFFNLIKKAKDQINHLWIAEATENSTYSFSFDSPICSHL 252
            SP + DDSF P+N NLEGS VGF NLIK+AKDQ+N LW+AEATENS Y FSFD P C HL
Sbjct: 1042 SPSV-DDSFAPVNSNLEGSTVGFVNLIKRAKDQMNQLWVAEATENSDYFFSFDLPHCYHL 1100

Query: 253  KIAAASAQSWGKTSSLV 269
            K AAASA+ W K SSL 
Sbjct: 1101 KNAAASAERWAKISSLT 1117