Jatropha Genome Database

JcCB0052451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0052451.10 + phase: 1 /partial/short
         (46 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022247001 assembled CDS                                        96   5e-21
GSVIVT01033834001 assembled CDS                                        45   9e-06

>GSVIVT01022247001 assembled CDS
          Length = 150

 Score = 95.5 bits (236), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/46 (95%), Positives = 46/46 (100%)

Query: 1   CDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 46
           CDPKSLLF+FGMQLD+SDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 105 CDPKSLLFVFGMQLDFSDALIGGGFSFKNPNATQTCGCGKSFAAEM 150


>GSVIVT01033834001 assembled CDS
          Length = 133

 Score = 44.7 bits (104), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 2   DPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 42
           DPK+L+ + G ++D+ D  +   F F NPN+   CGCG+SF
Sbjct: 83  DPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESF 123