Jatropha Genome Database

JcCB0050881.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0050881.20 + phase: 0 /partial
         (152 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016550001 assembled CDS                                       319   3e-88
GSVIVT01026580001 assembled CDS                                       319   4e-88
GSVIVT01033494001 assembled CDS                                       316   2e-87
GSVIVT01003099001 assembled CDS                                       315   4e-87
GSVIVT01024980001 assembled CDS                                       313   3e-86
GSVIVT01015049001 assembled CDS                                       223   2e-59
GSVIVT01033049001 assembled CDS                                       158   1e-39
GSVIVT01032120001 assembled CDS                                        85   1e-17
GSVIVT01000587001 assembled CDS                                        82   8e-17
GSVIVT01015556001 assembled CDS                                        75   9e-15
GSVIVT01016517001 assembled CDS                                        72   8e-14
GSVIVT01036362001 assembled CDS                                        72   9e-14
GSVIVT01008255001 assembled CDS                                        62   1e-10
GSVIVT01008254001 assembled CDS                                        56   5e-09

>GSVIVT01016550001 assembled CDS
          Length = 377

 Score =  319 bits (818), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 149/152 (98%), Positives = 151/152 (99%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD ED+QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDVQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152


>GSVIVT01026580001 assembled CDS
          Length = 408

 Score =  319 bits (817), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 149/152 (98%), Positives = 150/152 (98%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 32  MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 91

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 92  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 151

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTG
Sbjct: 152 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTG 183


>GSVIVT01033494001 assembled CDS
          Length = 289

 Score =  316 bits (810), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 149/152 (98%), Positives = 151/152 (99%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MA+ EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MAETEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152


>GSVIVT01003099001 assembled CDS
          Length = 288

 Score =  315 bits (808), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 149/152 (98%), Positives = 150/152 (98%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTG
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTG 152


>GSVIVT01024980001 assembled CDS
          Length = 376

 Score =  313 bits (801), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 146/149 (97%), Positives = 147/149 (98%)

Query: 4   NEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
            EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK
Sbjct: 3   EEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 62

Query: 64  RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 123
           RGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 63  RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 122

Query: 124 IMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           IMFETFN PAMYVAIQAVLSLYASGRTTG
Sbjct: 123 IMFETFNAPAMYVAIQAVLSLYASGRTTG 151


>GSVIVT01015049001 assembled CDS
          Length = 376

 Score =  223 bits (569), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 100/150 (66%), Positives = 123/150 (82%)

Query: 3   DNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++ Q +VCDNG+G+VKAGFAGDDAP  VFPS++G PR+   M+G+GQK+ Y+GDEAQ+
Sbjct: 2   DFDEKQAVVCDNGSGLVKAGFAGDDAPCVVFPSVIGWPRNKHAMIGIGQKEMYLGDEAQA 61

Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           +RG+L L YPI HG+V +W+ ME++W HTF  ELRV+ EE PVLLTE PLNPK N+EKM 
Sbjct: 62  RRGVLRLSYPINHGMVRDWEAMERLWQHTFEKELRVSIEERPVLLTEPPLNPKFNKEKMV 121

Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           +IMFE F  PA YVAIQAVLSLYASGRTTG
Sbjct: 122 EIMFEAFEIPATYVAIQAVLSLYASGRTTG 151


>GSVIVT01033049001 assembled CDS
          Length = 389

 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/152 (48%), Positives = 100/152 (65%), Gaps = 4/152 (2%)

Query: 3   DNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEA 60
           DN ++  +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG+  
Sbjct: 2   DNRNV--VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQLKDIIVGEGC 59

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
              R  L + YP+ +GIV NWDDM  IW H F+ EL++ P E  +LLT+ PLNP  NRE+
Sbjct: 60  AELRHQLDISYPVNNGIVQNWDDMGHIWDHAFFKELKIDPTECKILLTDPPLNPSKNRER 119

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           M + MFE +N   +++ IQAVL+LYA G  TG
Sbjct: 120 MVETMFEKYNFAGVFIQIQAVLTLYAQGLLTG 151


>GSVIVT01032120001 assembled CDS
          Length = 361

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 15/148 (10%)

Query: 7   IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRG 65
           ++ +V D G+ ++KAGFA  D AP  + P+ + R    G +      +    D       
Sbjct: 1   MEAVVVDAGSKLLKAGFAVPDQAPSMIIPTQMKRTLEDGPLTDSSLFEDITVD------- 53

Query: 66  ILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREKMTQI 124
                 P+  G + +WD ME + +H  Y  L      E  +L T+    PKA RE++ Q+
Sbjct: 54  ------PVVRGFIRDWDAMEDLLNHVLYTGLGWEMGNEGQILFTDPLSTPKAFREQLVQL 107

Query: 125 MFETFNTPAMYVAIQAVLSLYASGRTTG 152
           MFETFN    Y + QAVLSLYA GR +G
Sbjct: 108 MFETFNISGFYASEQAVLSLYAVGRISG 135


>GSVIVT01000587001 assembled CDS
          Length = 382

 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 72/145 (49%), Gaps = 35/145 (24%)

Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR---GI 66
           +V DNGTG  K GFAG+  P  + P++V      GVM  +   D ++GDEA ++      
Sbjct: 10  VVIDNGTGYTKMGFAGNVEPCFIAPTVVAVNESAGVMADL---DFFIGDEAIARSRNSST 66

Query: 67  LTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 126
             L YPI+H                              LLTE+PL    +RE   +IMF
Sbjct: 67  YNLSYPIDHYF----------------------------LLTESPLTAPESREYTGEIMF 98

Query: 127 ETFNTPAMYVAIQAVLSLYASGRTT 151
           ETFN P +Y+A+Q VL+L A+G TT
Sbjct: 99  ETFNVPGLYIAVQPVLAL-AAGYTT 122


>GSVIVT01015556001 assembled CDS
          Length = 433

 Score = 75.5 bits (184), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 10/130 (7%)

Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--L 67
           +V DNG G++KAG  G+  P AV P+ +G+P  +        K   +GD+  S   +  +
Sbjct: 7   VVLDNGGGLIKAGIGGERDPSAVIPNCMGKPPSS--------KKWLMGDQLHSHSDLTSV 58

Query: 68  TLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 127
           +L+ P + G + N D    IW H F N LR++P +  +LL E   N  + +  + +++FE
Sbjct: 59  SLRRPFDRGYLLNPDLQRDIWSHLFSNLLRISPSQSSLLLVEPLFNLPSIQRSIDELVFE 118

Query: 128 TFNTPAMYVA 137
                +++VA
Sbjct: 119 DLGFRSLFVA 128


>GSVIVT01016517001 assembled CDS
          Length = 725

 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 16/144 (11%)

Query: 9   PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDE--AQSKRGI 66
           P+V DNG    + G+AG+  PR +F +IV RPRH       G+    VGD   A  K   
Sbjct: 21  PIVIDNGGSNFRIGWAGETDPRIIFRNIVQRPRHKAT----GETVTIVGDHDPALMKYFD 76

Query: 67  LTLKYP---IEHGIVNNWDDMEKIWHHTFYNELRVAPE----EHPVLLTEAPLNPKANRE 119
            T   P    +  +V  ++ ME I  + F    R+  +    +HPVL+TE   NP  +R 
Sbjct: 77  CTRSSPRSAFDSNVVYQFEIMEYILDYGFE---RMGADGSQVDHPVLITECVCNPVQSRS 133

Query: 120 KMTQIMFETFNTPAMYVAIQAVLS 143
           KM +++FET+  P++   + A  S
Sbjct: 134 KMAELLFETYGVPSVAFGVDAAFS 157


>GSVIVT01036362001 assembled CDS
          Length = 246

 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 25/142 (17%)

Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           ++ + GT  +K GF+G+  P  + P++V               ++++       R     
Sbjct: 80  VIINYGTRYIKMGFSGNVEPCFIAPTVVA------------VNESFL----NQNRSTTNP 123

Query: 70  KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
            YPI HG V NWD ME+ W    +N LR   E+H  LL  +PL    +RE   +IMFETF
Sbjct: 124 SYPIVHGQVYNWDVMERFWQQGIFNYLRCDQEDHYFLLAGSPLTAPESREYTGEIMFETF 183

Query: 130 NTPAMYVAIQAVLSLYASGRTT 151
                    +   SLY S   T
Sbjct: 184 ---------KCSWSLYCSAAGT 196


>GSVIVT01008255001 assembled CDS
          Length = 176

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 25/117 (21%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGR--------------------P 40
           M   +++  +V D G+   KAG+AG+DAP+AVFPS+VG                      
Sbjct: 1   MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMEVDDPANTENSGSGNDS 60

Query: 41  RHTG----VMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVNNWDDMEKIWHHTF 92
           ++TG         G++  YVG +A   +R  + +  PI+ G+V +WD ++ IW H F
Sbjct: 61  KNTGRPFDSEKSKGKRKLYVGSQALGHRRDHMEVLSPIKDGVVVDWDIVDSIWDHAF 117


>GSVIVT01008254001 assembled CDS
          Length = 442

 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%)

Query: 96  LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           L V  +EHP+LL E   N +  RE+  Q+MFE +  PA+++A  AVL+ +ASGR T 
Sbjct: 119 LLVDLKEHPMLLAEPSSNTQQQRERTAQLMFEKYEVPALFLAKNAVLTSFASGRATS 175