Jatropha Genome Database

JcCB0050881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0050881.10 + phase: 0 /pseudo/partial
         (277 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016549001 assembled CDS                                       369   e-103
GSVIVT01012450001 assembled CDS                                        67   1e-11
GSVIVT01012448001 assembled CDS                                        61   7e-10
GSVIVT01034016001 assembled CDS                                        60   1e-09

>GSVIVT01016549001 assembled CDS
          Length = 281

 Score =  369 bits (948), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/249 (74%), Positives = 195/249 (78%), Gaps = 31/249 (12%)

Query: 31  LNYKKSLKDYCDGNS--LTVVLKDLGPQVSYRTLFFWEYLGXXXXXXXXXXXXXXQYFGY 88
           LNYKKS+KDYCDGNS  LTVV KDLGPQ+SYRTLFFWEYLG              QYFGY
Sbjct: 62  LNYKKSVKDYCDGNSSNLTVVFKDLGPQISYRTLFFWEYLGPLLIYPIFYFFPVYQYFGY 121

Query: 89  KGERVIQPVQTYALLYWCFHYFKRIMETFFVHRFSHATSPLSNVFRNCAYYWTFGCYIAY 148
           KGER+I PVQTYAL YW                             NCAYYWTFG YIAY
Sbjct: 122 KGERLIHPVQTYALYYW-----------------------------NCAYYWTFGSYIAY 152

Query: 149 YVNHPLYTPVSDLQWKIGFGFGLICQVANFYCHILLKNLRSPDGGGGYQIPRGFLFDIVT 208
           YVNHPLYTPVSDLQ KIGFGFGL+CQV NFYCHILL+NLRSPDG GGYQIP GFLF+IVT
Sbjct: 153 YVNHPLYTPVSDLQMKIGFGFGLVCQVTNFYCHILLRNLRSPDGNGGYQIPHGFLFNIVT 212

Query: 209 CANYTTEIYQWLGFNIATQTVAGYIFLVVAAMIMTNWALAKHRRLKKLFDGKDGRPKYPR 268
           CANYTTEIYQW+GFNIATQTVAGY+FLVVAA IMTNWALAKHRRL+KLFDGK+GRPKYPR
Sbjct: 213 CANYTTEIYQWVGFNIATQTVAGYVFLVVAAAIMTNWALAKHRRLRKLFDGKEGRPKYPR 272

Query: 269 RWVILPPFL 277
           RWVILPPFL
Sbjct: 273 RWVILPPFL 281


>GSVIVT01012450001 assembled CDS
          Length = 199

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 13/173 (7%)

Query: 108 HYFKRIMETFFVHRFSHATSPLSNVFRNCAYYWTFGCYI-AYYVNHPLYTPVSDLQWK-- 164
           H+FKR++E  FVH++S      S +  +  Y  T    I A ++      P  DL+    
Sbjct: 36  HFFKRVLEVLFVHKYSGGMVLDSIILISSGYSTTTATMIHAQHIAQGFMEPAIDLKCPGI 95

Query: 165 IGFGFGLICQVANFYCHILLKNLRSPDGGGGYQIPRGFLFDIVTCANYTTEIYQWLGFNI 224
           + F  G IC   NFY H LL  LR   G  GY+IP+G LF  V C +Y  EI +++G   
Sbjct: 96  LLFSVG-IC--GNFYHHYLLSKLRG-KGEKGYKIPKGGLFHQVICPHYLFEILEFVGVFF 151

Query: 225 ATQTVAGYIFLVVAAMIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 277
            +QT+    F +   + +   + A  +     F+       +PR    L P++
Sbjct: 152 ISQTLYSLSFTISTTLYLIGRSYATRKWYISKFE------NFPRETKALIPYI 198


>GSVIVT01012448001 assembled CDS
          Length = 227

 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 108 HYFKRIMETFFVHRFSHATSPLSNVFRNCAYYWTFGCYIAYYVNHPL---YTPVSDLQWK 164
           H+ KR +E  F+H++S      S +  + +Y+ +    I  Y  H +     P+ DL+  
Sbjct: 36  HFLKRNLEVLFIHKYSGGMVLDSGIVISLSYFTSTATTI--YSQHLVQGSMEPLIDLKCP 93

Query: 165 IGFGFGLICQVANFYCHILLKNLRSPDGGGGYQIPRGFLFDIVTCANYTTEIYQWLGFNI 224
            G    L+    NFY H LL  LR  D    Y+IPRG LF  V C +Y  EI  ++G + 
Sbjct: 94  -GILLFLVGISGNFYHHYLLSKLREKDEKS-YKIPRGGLFHQVICPHYLFEILAFIGVSF 151

Query: 225 ATQTVAGYIFLVVAAMIMTNWALAKHR 251
            +QT+  + F +  A+ +   + A  +
Sbjct: 152 MSQTLYYFSFTIGTALYLLGRSYATRK 178


>GSVIVT01034016001 assembled CDS
          Length = 257

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 88/199 (44%), Gaps = 22/199 (11%)

Query: 90  GERVIQPVQTYALLYWCFHYFKRIMETFFVHRFSHATSPLSNVFRNCAYYWTFGCYI--- 146
           G+R   P     +  + FHY  R +   +     ++T+   N F        FG  +   
Sbjct: 69  GDRSSNPRSLILISIYLFHYIHRTL--IYPLHLRNSTAAKRNGFPVSVALMAFGFNLLNA 126

Query: 147 ---AYYVNHPLYTPVSDLQW-----KIGFGFGLICQVANFYCHILLKNLRSPDGGGGYQI 198
              A +V+H  Y    D  W      +G    L   + N    + L  L+S   GGGY++
Sbjct: 127 YLQARWVSH--YANYEDDGWFWWRFWVGLVIFLDGMLVNVRSDLALVGLKSQ--GGGYKV 182

Query: 199 PRGFLFDIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAAMIMTNWALAKHRRLKKLFD 258
           PRG  F++V+CANY  E+ +WLG+ + T +  G  FL+     +   A A H+   + F 
Sbjct: 183 PRGGWFELVSCANYFGEVVEWLGWAVMTWSWVGLGFLLYTCANLVPRARANHKWYLEKF- 241

Query: 259 GKDGRPKYPRRWVILPPFL 277
           G+D    YP+    + PFL
Sbjct: 242 GED----YPKGRKAVIPFL 256