Jatropha Genome Database

JcCB0050531.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0050531.20 - phase: 0 
         (263 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034016001 assembled CDS                                       357   3e-99
GSVIVT01012450001 assembled CDS                                        78   4e-15
GSVIVT01018810001 assembled CDS                                        77   8e-15
GSVIVT01024163001 assembled CDS                                        72   3e-13
GSVIVT01012448001 assembled CDS                                        72   4e-13
GSVIVT01016549001 assembled CDS                                        51   5e-07

>GSVIVT01034016001 assembled CDS
          Length = 257

 Score =  357 bits (916), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 179/261 (68%), Positives = 206/261 (78%), Gaps = 9/261 (3%)

Query: 5   DQNLFDYSLLAFYLIGPPTFISLRFLQAPYGKHNRPGWGPTIFPPLAWFLMESXXXXXXX 64
           D+ LF  SL+A YLI PPTFISLRFLQAPYGKH+R GWGPT+ P LAWFLMES       
Sbjct: 4   DRTLFHNSLIALYLIAPPTFISLRFLQAPYGKHHRSGWGPTVPPSLAWFLMESPTVWLTL 63

Query: 65  XXXXXGQHATNFKALILMSPYIIHYFHRTCIYPLRLYLNASQQNTKAA--SGFPVSVALI 122
                G  ++N ++LIL+S Y+ HY HRT IYPL L      +N+ AA  +GFPVSVAL+
Sbjct: 64  LIYPLGDRSSNPRSLILISIYLFHYIHRTLIYPLHL------RNSTAAKRNGFPVSVALM 117

Query: 123 AFGFNLLNAYLQSRWVSHYKDDYDSDGWFWWKFIGGLFVFIWGMWINIWSDRVLVGLKRQ 182
           AFGFNLLNAYLQ+RWVSHY + Y+ DGWFWW+F  GL +F+ GM +N+ SD  LVGLK Q
Sbjct: 118 AFGFNLLNAYLQARWVSHYAN-YEDDGWFWWRFWVGLVIFLDGMLVNVRSDLALVGLKSQ 176

Query: 183 GGGYKVPRGGWFELVSCPNYFGEIVEWVGWSLMTWSWVGFGFFLYTCANLVPRAHANHKW 242
           GGGYKVPRGGWFELVSC NYFGE+VEW+GW++MTWSWVG GF LYTCANLVPRA ANHKW
Sbjct: 177 GGGYKVPRGGWFELVSCANYFGEVVEWLGWAVMTWSWVGLGFLLYTCANLVPRARANHKW 236

Query: 243 YQDKFGEDYPKSRKAVIPFLY 263
           Y +KFGEDYPK RKAVIPFLY
Sbjct: 237 YLEKFGEDYPKGRKAVIPFLY 257


>GSVIVT01012450001 assembled CDS
          Length = 199

 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 65/107 (60%), Gaps = 2/107 (1%)

Query: 158 GLFVFIWGMWINIWSDRVLVGLKRQG-GGYKVPRGGWFELVSCPNYFGEIVEWVGWSLMT 216
           G+ +F  G+  N +   +L  L+ +G  GYK+P+GG F  V CP+Y  EI+E+VG   ++
Sbjct: 94  GILLFSVGICGNFYHHYLLSKLRGKGEKGYKIPKGGLFHQVICPHYLFEILEFVGVFFIS 153

Query: 217 WSWVGFGFFLYTCANLVPRAHANHKWYQDKFGEDYPKSRKAVIPFLY 263
            +     F + T   L+ R++A  KWY  KF E++P+  KA+IP+++
Sbjct: 154 QTLYSLSFTISTTLYLIGRSYATRKWYISKF-ENFPRETKALIPYIF 199


>GSVIVT01018810001 assembled CDS
          Length = 336

 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 117/269 (43%), Gaps = 24/269 (8%)

Query: 1   MAFSDQNLFDYSLLAFYLIGPPTFISLRFLQAPYGKHNRPGWGPTIFPPLAWFLMESXXX 60
           MA  D    DYS +A +L G    +SL   ++   +H    W P         LME    
Sbjct: 86  MAPLDSVSLDYSTIASHLTGGSHILSLHKSRSTSAQHRYRVWRPVFL----LLLMELHVM 141

Query: 61  XXXXXXXXXGQHATNFKALILMSPYIIHYFHRTCIYPLRLYLNASQQ--NTKAASGFPVS 118
                      ++++ +  I    Y+   F      PL L    + +  N  A     ++
Sbjct: 142 RRLYETLYVFNYSSSARMHIF--GYLTGLFFYIAA-PLSLCTCCAVEVFNFTADQVAEIN 198

Query: 119 VALIAFGFNLLNAYLQSRWVSHYKDDYDSDGWFWWKFIGGLFVFIWGMWINIWSDRVLVG 178
           V     G +LL+      W   Y       GWF W    G  +FIWG W++      ++G
Sbjct: 199 VE----GRDLLSITGSDWW--GYVKPITKLGWFEWI---GAAIFIWG-WVHQCRCHAILG 248

Query: 179 --LKRQGGGYKVPRGGWFELVSCPNYFGEIVEWVGWSLMTWS--WVGFGFFLYTCANLVP 234
              K + G Y++P G WFELVS P+Y  E+V + G  + + +  +  +  F++  ANL  
Sbjct: 249 SIRKERTGEYRIPHGDWFELVSSPHYLAEMVIYAGLLVASGAADFTIWLLFVFVVANLGF 308

Query: 235 RAHANHKWYQDKFGEDYPKSRKAVIPFLY 263
            A    +WY  KF EDYP+ R+A +P++Y
Sbjct: 309 AAAETQRWYLHKF-EDYPRKRRACLPYIY 336


>GSVIVT01024163001 assembled CDS
          Length = 355

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 64/115 (55%), Gaps = 14/115 (12%)

Query: 158 GLFVFIWGMWINIWSDRVLVGL----KRQGGGYKVPRGGWFELVSCPNYFGEIVEWVGWS 213
           G  +FIWG WI+      ++GL    K Q G Y +P G WFE+VS P+Y  EIV + G  
Sbjct: 229 GAAIFIWG-WIHQHRCHAILGLLQEHKEQEGEYGIPDGDWFEIVSSPHYLAEIVIYGGLV 287

Query: 214 LMTWS-----WVGFGFFLYTCANLVPRAHANHKWYQDKFGEDYPKSRKAVIPFLY 263
           + +       W+ FGF     +NL+  A    +WY  KF ++YP +R A+IPF+Y
Sbjct: 288 VASGGSDLTIWLLFGF---VASNLIFAAAETQRWYLHKF-DNYPSNRFAIIPFVY 338


>GSVIVT01012448001 assembled CDS
          Length = 227

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 60/103 (58%), Gaps = 2/103 (1%)

Query: 158 GLFVFIWGMWINIWSDRVLVGLKRQG-GGYKVPRGGWFELVSCPNYFGEIVEWVGWSLMT 216
           G+ +F+ G+  N +   +L  L+ +    YK+PRGG F  V CP+Y  EI+ ++G S M+
Sbjct: 94  GILLFLVGISGNFYHHYLLSKLREKDEKSYKIPRGGLFHQVICPHYLFEILAFIGVSFMS 153

Query: 217 WSWVGFGFFLYTCANLVPRAHANHKWYQDKFGEDYPKSRKAVI 259
            +   F F + T   L+ R++A  KWY  KF E +P+  KA++
Sbjct: 154 QTLYYFSFTIGTALYLLGRSYATRKWYLSKF-ESFPREIKALL 195


>GSVIVT01016549001 assembled CDS
          Length = 281

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 183 GGGYKVPRGGWFELVSCPNYFGEIVEWVGWSLMTWSWVGFGFFLYTCANLVPRAHANHKW 242
            GGY++P G  F +V+C NY  EI +WVG+++ T +  G+ F +   A +   A A H+ 
Sbjct: 197 NGGYQIPHGFLFNIVTCANYTTEIYQWVGFNIATQTVAGYVFLVVAAAIMTNWALAKHRR 256

Query: 243 YQDKFG--EDYPK-SRKAVI--PFL 262
            +  F   E  PK  R+ VI  PFL
Sbjct: 257 LRKLFDGKEGRPKYPRRWVILPPFL 281