Jatropha Genome Database

JcCB0050531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0050531.10 + phase: 0 /partial
         (356 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026852001 assembled CDS                                        61   1e-09
GSVIVT01034017001 assembled CDS                                        51   7e-07
GSVIVT01003458001 assembled CDS                                        49   4e-06

>GSVIVT01026852001 assembled CDS
          Length = 736

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 124/259 (47%), Gaps = 30/259 (11%)

Query: 47  NEMIEKLKREIDLEFSEAVKAMGFKDRFATLREEFLKA--NSQDQLMHPGLMDKIEKLKN 104
           ++ I+KL+ ++D E + A  +MG +++  +L+ E  K   +  +Q ++  L +K++++  
Sbjct: 475 SQTIKKLEEDVDQEITNAFISMGLQEKLESLQLELSKTPDDPNNQTLNWALKEKVDRIMQ 534

Query: 105 EFTQGLSAAPNFPSLKYKLDMLKEFSKAKNISEKNSKGLTLKQEINKKLKEVMDQPDMKE 164
           EF   L+    +  LK KL+ML   + A  + E   K   LK EIN+K+       ++K 
Sbjct: 535 EFDHNLARPGAYLGLKQKLEML---NMAHRLIEHKEKAEKLKAEINQKVPA-----EVKA 586

Query: 165 KMEALE--AEVLRSGAYNEGELDXXXXXXXXXXXXXXXXXLANVFKSLGLEVEIVKSKAK 222
           KME L+   + L  G   + +L                  L  V KS  L  EI+    +
Sbjct: 587 KMEVLKEAQQKLSKGDPFDKDL--------VEEVEKAKNELKEVLKSANL--EIIGMTKR 636

Query: 223 ELGEQTPLLDFKAKVENLKEQTNKKIEGLINSSDLKNMIELLKLEVAKAGNKPDVTSKNK 282
            +    P  D    +  + E+  K+IE  IN + L   IE LK EVAK       +S   
Sbjct: 637 NVPPPPP--DLAENIAKVNEEIGKEIERAINVTGLNGKIEELKAEVAKG------SSSET 688

Query: 283 IEALEHQIKQRLSSAINST 301
           +E L+ +I++++++ ++ T
Sbjct: 689 VEKLKAEIQEQITAVMDVT 707


>GSVIVT01034017001 assembled CDS
          Length = 582

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 42/72 (58%)

Query: 148 EINKKLKEVMDQPDMKEKMEALEAEVLRSGAYNEGELDXXXXXXXXXXXXXXXXXLANVF 207
           EINK+ KEVMD+ D+KEK+EAL+AE+  S     G+LD                 +A V 
Sbjct: 507 EINKRFKEVMDRADLKEKIEALKAEIENSEMSTIGDLDDELKEKIVRVKKEIEFEMAEVL 566

Query: 208 KSLGLEVEIVKS 219
           KSLGL+V  ++S
Sbjct: 567 KSLGLDVAGMRS 578


>GSVIVT01003458001 assembled CDS
          Length = 193

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 53/105 (50%)

Query: 116 FPSLKYKLDMLKEFSKAKNISEKNSKGLTLKQEINKKLKEVMDQPDMKEKMEALEAEVLR 175
           + ++++  D  K  +  ++   + +K  T KQEINK+ KE  D  D+KEK+EAL+ E+  
Sbjct: 68  YKAVEWTEDDKKNLTDLRSSEIERNKATTSKQEINKRFKEFKDCADIKEKIEALKVEINN 127

Query: 176 SGAYNEGELDXXXXXXXXXXXXXXXXXLANVFKSLGLEVEIVKSK 220
           S     G LD                 +A V KS+GL+V++   K
Sbjct: 128 SEMPTIGNLDDALKEKTVKVKKEIEFEMAEVLKSMGLDVQVWNQK 172