Jatropha Genome Database

JcCB0050421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0050421.20 + phase: 1 /TE
         (1716 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018780001 assembled CDS                                       212   1e-54
GSVIVT01000901001 assembled CDS                                        72   2e-12
GSVIVT01012583001 assembled CDS                                        67   6e-11
GSVIVT01021619001 assembled CDS                                        54   5e-07
GSVIVT01017026001 assembled CDS                                        54   5e-07

>GSVIVT01018780001 assembled CDS
          Length = 1567

 Score =  212 bits (539), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/292 (37%), Positives = 167/292 (57%), Gaps = 4/292 (1%)

Query: 970  NAPATFQRCMMSIFSDMVEKFIEVFMDDFSVFGSSFDACLHNLSLVMQRCEDTNLVLNWE 1029
            N PA F   M  +F   +++F+ VF+DD  ++  S +    +L   +       L    +
Sbjct: 972  NVPAAFMDLMNRVFRAYLDQFVIVFVDDILIYSRSLEEHKQHLVTTLGTLRRHQLYGKLD 1031

Query: 1030 KCHFMVSEGIVLGHKISQKGIEVDKAKIEVIEKLPPPNTVKGIRSFLGHAGFYRRFIKDF 1089
            K  F ++E   LGH +S+ GI VD +K+E +++   P  V  +RSFLG AG+YRRF++DF
Sbjct: 1032 KSEFWLTEVNFLGHVVSEAGIAVDHSKVEAVQEWQRPTNVFEVRSFLGLAGYYRRFVEDF 1091

Query: 1090 SKITKPLCNLLVKDAPFDFDKECLDAFNRLKKELISAPIITTPDWTLPFELMCDASDHAV 1149
            S+I  P+  L  K   FD+++EC +AF  LK++L +AP++T P     F + CDAS   +
Sbjct: 1092 SRIAAPMTRLTRKGVKFDWNEECENAFQELKRKLTTAPVLTAPISGELFTIYCDASTVGL 1151

Query: 1150 GAVLGQRKDKKLHVIYYASRTLNDAQLNYATTEKELLAIVFAFDKFRAYLIGAKTIVYTD 1209
            G VL Q+      V+ YASR L   + NY   + EL A+VFA   +R YL G K  VY+D
Sbjct: 1152 GCVLMQQGK----VVAYASRQLKQHERNYPAHDLELAAVVFALKTWRHYLYGEKFEVYSD 1207

Query: 1210 HSAIKYLLEKKDAKPRLIRWVLLLQEFDLEIRDKKGTENLVADHLSRLELGE 1261
            H ++KY+  +KD   R  RW+  L+++D  +  + G  N+VAD LSR   G+
Sbjct: 1208 HKSLKYIFTQKDLNSRQRRWMETLEDYDFALHYQPGKANVVADALSRKSYGQ 1259


>GSVIVT01000901001 assembled CDS
          Length = 93

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/51 (64%), Positives = 40/51 (78%)

Query: 1141 MCDASDHAVGAVLGQRKDKKLHVIYYASRTLNDAQLNYATTEKELLAIVFA 1191
            MCDASD A+GAVL QR+D K +VIYYA + LN+AQ NY T EKELL +V +
Sbjct: 1    MCDASDFAIGAVLRQREDGKPYVIYYARKALNEAQRNYTTIEKELLVVVVS 51


>GSVIVT01012583001 assembled CDS
          Length = 96

 Score = 67.4 bits (163), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1422 LDFMGPFPPSYSNQ-YILVAVDYVSKWAEAVALPNNDAKSVMSFIKKNIFTRHGTPRAII 1480
            +D +GP P + + + ++L+A DY SKW EA A  N   K +  FI KNI  R G P+ II
Sbjct: 1    MDIVGPLPTAGAQKKFLLIATDYFSKWVEAEAYANIKDKDITKFIWKNIIYRFGIPQEII 60

Query: 1481 TDGGKHFCNKYLDSLLAKYGVTHRVGTPYHPQTSGQ 1516
             D G  F +    +  ++  + +   TP +P+  G+
Sbjct: 61   ADNGLQFDSITFQTFYSELKIKNLYSTPRYPKAMGK 96


>GSVIVT01021619001 assembled CDS
          Length = 69

 Score = 54.3 bits (129), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 32/42 (76%)

Query: 977  RCMMSIFSDMVEKFIEVFMDDFSVFGSSFDACLHNLSLVMQR 1018
            RC++SI SDMVE+ ++VFMDD  ++  +FD CL NL  V++R
Sbjct: 12   RCLLSIISDMVERKMKVFMDDLKIYVKTFDDCLLNLKRVLKR 53


>GSVIVT01017026001 assembled CDS
          Length = 1273

 Score = 54.3 bits (129), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 16/194 (8%)

Query: 1390 LCDRCQRLGNISKRHEMPL--NSILEVEIFDIWGLDFMGPFPPSYSNQ--YILVAVDYVS 1445
            LC  CQ    ++K H +P   N      + D+   D  GP P   ++   Y ++ +D  S
Sbjct: 1038 LCSTCQ----LAKNHRLPYSRNEHRSSHVLDLIHCDLPGPSPIKSNSGFLYYVIFIDDYS 1093

Query: 1446 KWAEAVALP-NNDAKSVMSFIKKNIFTRH-GTPRAIITDGGKHFCNKYLDSLLAKYGVTH 1503
            ++     L   +D   +    KK +  +H    +   +DGG  F N    + L   G+ H
Sbjct: 1094 RFTWLYPLKFKSDFFDIFLQFKKFVENQHFARIKVFQSDGGAEFTNTCFKAHLRTSGIHH 1153

Query: 1504 RVGTPYHPQTSGQVEVTNREIKKILETTVGQSR---KDWSKKLDDALWAYRTAFKTPI-- 1558
            ++  PY P  +G+ E  +R + +   T +  S    + W      A +       TP+  
Sbjct: 1154 QLSCPYTPAQNGRAERKHRHVTETGLTLLFHSHLSPRFWVDAFSTATYII-NRLPTPLLG 1212

Query: 1559 GMSPYRMVYGKACH 1572
            G SP+ ++YG + H
Sbjct: 1213 GKSPFELLYGYSPH 1226