Jatropha Genome Database

JcCB0050421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0050421.10 - phase: 0 /partial
         (124 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017167001 assembled CDS                                       167   8e-43

>GSVIVT01017167001 assembled CDS
          Length = 411

 Score =  167 bits (424), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 79/94 (84%), Positives = 89/94 (94%)

Query: 31  MEVRYTDVDYLVFSDAASLMASGESPYKRSTYRYSPLLAFLLIPNSLIHRSWGKFLFSAS 90
           MEVRYTDVDYLVFSDAASL+ASG+SPY+RSTYRYSPLLAFLL+PNS+IH SWGKFLFSAS
Sbjct: 1   MEVRYTDVDYLVFSDAASLVASGKSPYQRSTYRYSPLLAFLLVPNSIIHPSWGKFLFSAS 60

Query: 91  DLLVGLFIHSILKRRKVPEDLCLYSVMVWLLNPF 124
           DLLVGLFIH+IL+ RKVPE+LC  ++MVWL NPF
Sbjct: 61  DLLVGLFIHTILELRKVPENLCTCALMVWLFNPF 94