Jatropha Genome Database

JcCB0050341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0050341.10 - phase: 0 /partial
         (379 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008799001 assembled CDS                                       624   e-179
GSVIVT01012124001 assembled CDS                                        84   1e-16

>GSVIVT01008799001 assembled CDS
          Length = 644

 Score =  624 bits (1608), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 304/405 (75%), Positives = 336/405 (82%), Gaps = 28/405 (6%)

Query: 3   STTEALSKLNINGDFASSVXXXXXXXXXXXXEQIELAKILVEMGQSHLFEHWPEPGVDDE 62
           STTE LSKL+ING+   SV            +QI+LA++LVE GQSHLF+ W EPGV+DE
Sbjct: 7   STTEKLSKLDINGESIFSVPNLHKNLSILSPDQIKLARMLVEAGQSHLFQSWAEPGVEDE 66

Query: 63  EKKALFDQVARLNSSYPGGLASYIKTARELLADSKAGKNPFDGFTPSVPTGENLTFGDEN 122
           EK+  F+QVARLN+SYPGGL SYIKTARELLADSKAGKNPFDGFTPSVPTGE LT+GD+N
Sbjct: 67  EKRGFFEQVARLNASYPGGLTSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLTYGDDN 126

Query: 123 FVKFEEAGVREAQNAAFVLVAGGLGERLGYNGIKVALPMETTTGTCFLQHYIESVLALQE 182
           FV FEE G+REA+NA FVLVAGGLGERLGYNGIK+ALP ETT GTCFLQ+YIES+LALQ+
Sbjct: 127 FVNFEELGIREARNAVFVLVAGGLGERLGYNGIKLALPSETTMGTCFLQNYIESILALQD 186

Query: 183 ASYRLTQGE----------------------------CQRDIPFVIMTSDDTHSRTLELL 214
           AS RL QG                             CQ  IP VIMTSDDTH+RT+ELL
Sbjct: 187 ASCRLVQGYNHILRMPQSTIPTKRVSASIAKTKLGGGCQNQIPLVIMTSDDTHARTIELL 246

Query: 215 ESNSYFGMKTSQIILLKQEKVACLEDNDARLALDPHNKYRIQTKPHGHGDVHSLLYSSGL 274
           ESN+YFGM+ SQ+ LLKQEKVACL+DNDARLA+DP +KYRIQTKPHGHGDVHSLLYSSGL
Sbjct: 247 ESNAYFGMEPSQVKLLKQEKVACLDDNDARLAVDPKSKYRIQTKPHGHGDVHSLLYSSGL 306

Query: 275 LSKWRDAGLRWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITKLT 334
           L+ W DAGLRWVLFFQDTNGLLFKAIPA+LGVS++K Y VNSLAVPRKAKEAIGGITKLT
Sbjct: 307 LNIWYDAGLRWVLFFQDTNGLLFKAIPAALGVSSSKLYDVNSLAVPRKAKEAIGGITKLT 366

Query: 335 HADGRSMVINVEYNQLDPLLRATGHPDGDVNCETGYSPFPGNINQ 379
           HADGR+MVINVEYNQLDPLLRATGHPDGDVNCETGYSPFPGNINQ
Sbjct: 367 HADGRTMVINVEYNQLDPLLRATGHPDGDVNCETGYSPFPGNINQ 411


>GSVIVT01012124001 assembled CDS
          Length = 485

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 111/236 (47%), Gaps = 17/236 (7%)

Query: 138 AFVLVAGGLGERLGYNGIKVALPMETTTGTCFLQHYIESVLALQEASYRLTQGECQRDIP 197
           A VL++GG G RLG +  K    +   +G    Q   E +L +Q  + + T       +P
Sbjct: 110 AVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQSTNEGSGGFVP 169

Query: 198 --FVIMTSDDTHSRTLELLESNSYFGMKTSQIILLKQEKVACLEDNDARLALDPHNKYRI 255
             + IMTS  T   T +  ES+ YFG++  QI   +Q  + C+   D R  ++    Y++
Sbjct: 170 IHWYIMTSPFTDDVTRKFFESHKYFGLEADQITFFQQGTIPCI-SKDGRFIME--TPYKV 226

Query: 256 QTKPHGHGDVHSLLYSSGLLSKWRDAGLRWVLFFQDTNGLLFKAIPASLGVSATKQYHVN 315
              P G+G V+S L SS LL      G++++  +   N L+  A P  LG    K    +
Sbjct: 227 AKAPDGNGGVYSALKSSRLLEDMATRGVKYLDCYGVDNALVRVADPTFLGYFIDKGV-AS 285

Query: 316 SLAVPRKA--KEAIGGITKLTHADGRSMVINVEYNQLDPLLRATGHPDGDVNCETG 369
           +  V RKA  +E +G   +       S+   VEY++LDP L +       +N ETG
Sbjct: 286 AAKVVRKAYPQEKVGVFVRRGKGGPLSV---VEYSELDPTLASA------INQETG 332