Jatropha Genome Database

JcCB0049771.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0049771.20 - phase: 0 /partial
         (140 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015663001 assembled CDS                                       275   5e-75

>GSVIVT01015663001 assembled CDS
          Length = 413

 Score =  275 bits (703), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 125/140 (89%), Positives = 136/140 (97%)

Query: 1   CFHPSATVGELSEPMWPVEARNAAIANSYFVGSINRVGTEIFPNPFTSGDGKPQHSDFGH 60
            F+PSATVGELSEPMWP+EARNAAIANSYFV SINRVGTEIFPNPFTSGDGKPQH+DFGH
Sbjct: 274 VFNPSATVGELSEPMWPIEARNAAIANSYFVASINRVGTEIFPNPFTSGDGKPQHADFGH 333

Query: 61  FYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQLKDKWGFRMTARYELYADMLASY 120
           FYGSSHFSAPDASCTPSLSRY+DGLLISDMDLNLCRQLKDKWGFRMT+RYE+YA++LA Y
Sbjct: 334 FYGSSHFSAPDASCTPSLSRYQDGLLISDMDLNLCRQLKDKWGFRMTSRYEMYAELLARY 393

Query: 121 LKPDFEPQIISDPLLHKKSS 140
           +KPDFEPQ++SDP LHKKSS
Sbjct: 394 IKPDFEPQVVSDPSLHKKSS 413