Jatropha Genome Database

JcCB0049771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0049771.10 - phase: 0 
         (202 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012510001 assembled CDS                                       106   7e-24
GSVIVT01007764001 assembled CDS                                        55   2e-08

>GSVIVT01012510001 assembled CDS
          Length = 702

 Score =  106 bits (265), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/138 (45%), Positives = 77/138 (55%), Gaps = 2/138 (1%)

Query: 66  EWRWDAAFHGVIESAKKRIDSLINPRRKEVEVG--AVGDRESGKGDKVXXXXXXXXXXXX 123
           ++RWD+A    +++A KR DS +N  R   + G   V   E G                 
Sbjct: 80  DFRWDSAIKQFLKNAIKRFDSYVNSYRNGAKDGRSCVDVAERGNEAAEEDKEWDWDRWRK 139

Query: 124 XXXXVDEQERIVSVLKSQLNHAVNREDYEXXXXXXXXXXXXXTNDSVGTVMSQLNRAVTE 183
               VDEQERIVS+LKSQL HAV +EDYE             TND+VG VMS LNRA+ E
Sbjct: 140 HFSEVDEQERIVSILKSQLGHAVKKEDYEDAARLKVAIAAAATNDTVGRVMSLLNRAIAE 199

Query: 184 EHYKDAAFLRDNAGAGLV 201
           E Y DAAF+RD+AGAGLV
Sbjct: 200 ERYDDAAFIRDSAGAGLV 217


>GSVIVT01007764001 assembled CDS
          Length = 656

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%)

Query: 128 VDEQERIVSVLKSQLNHAVNREDYEXXXXXXXXXXXXXTNDSVGTVMSQLNRAVTEEHYK 187
           +++ E   SVLK QL  A+ RED+E             + DSV  +MSQL  A+ EE Y 
Sbjct: 100 IEQAESFASVLKFQLEDAIEREDFEEAAKLKMAIAEAMSMDSVTEIMSQLKNAIDEERYH 159

Query: 188 DAAFLRDNAGAGLV 201
           DA+ L  +  +GLV
Sbjct: 160 DASKLCRHTASGLV 173