Jatropha Genome Database

JcCB0047491.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0047491.20 + phase: 0 /partial
         (319 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003989001 assembled CDS                                       486   e-138
GSVIVT01032665001 assembled CDS                                       108   3e-24
GSVIVT01033233001 assembled CDS                                        58   7e-09

>GSVIVT01003989001 assembled CDS
          Length = 381

 Score =  486 bits (1251), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 231/266 (86%), Positives = 253/266 (95%)

Query: 34  FHMSKVTVVGSGNWGSVAAKLIASNTLKLTSFHDEVRMWVFEEALPSGEKLTDVINRTNE 93
            H SKVTVVGSGNWGSVAAKLIASNTLKL+SFHDEVRMWV+EE LPSGEKL++VIN+ NE
Sbjct: 21  LHKSKVTVVGSGNWGSVAAKLIASNTLKLSSFHDEVRMWVYEEILPSGEKLSEVINQNNE 80

Query: 94  NVKYLPGIKLGKNVVADPDLDNAVRDANMLVFVTPHQFMEGICKRLVGKIKEGVEAISLI 153
           NVKYLPGIKLGKNVVADPDL++AV+DA MLVFVTPHQFMEGICKRLVGKI+   EAISLI
Sbjct: 81  NVKYLPGIKLGKNVVADPDLEHAVKDATMLVFVTPHQFMEGICKRLVGKIRGDAEAISLI 140

Query: 154 KGMEVKMEGPCMISSLISSQLRVNCCVLMGANIANEIAVEKFSEATVGYKGNREIAEKWV 213
           KGMEVKMEGPCMIS+LI+  L +NCCVLMGANIANEIAVEKFSEATVGY+ NR+IAE+WV
Sbjct: 141 KGMEVKMEGPCMISTLITDLLGINCCVLMGANIANEIAVEKFSEATVGYRENRDIAERWV 200

Query: 214 QLFSTPYFMVTPVQDVEGVELCGTLKNVVALAAGFVDGLEMGNNTKAAIMRIGLREMRAF 273
           +LFSTPYFMV+ VQDVEGVELCGTLKNVVA+AAGFVDGLEMGNNTKAAIMRIGLREM+AF
Sbjct: 201 RLFSTPYFMVSAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMKAF 260

Query: 274 SKLLFSSVKDSTFFESCGVADVITTC 299
           SKLLFSSV+DSTFFESCG+AD+ITTC
Sbjct: 261 SKLLFSSVRDSTFFESCGIADLITTC 286


>GSVIVT01032665001 assembled CDS
          Length = 1241

 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 132/266 (49%), Gaps = 19/266 (7%)

Query: 37  SKVTVVGSGNWGSVAAKLIASNTLKLTSFHDEVRMWVFEEALPSGEKLTDVINRTNENVK 96
           +KV V+G G++G+  A  IA+   +L     EV M V         ++   IN  + N K
Sbjct: 81  NKVVVLGGGSFGTAMAAHIAARKAQL-----EVNMLV------RNSQVCQSINENHCNCK 129

Query: 97  YLPGIKLGKNVVADPDLDNAVRDANMLVFVTPHQFMEGICKRLVGKIKEGVEAISLIKGM 156
           Y P  KL +NV+A  D   A+  A+  +   P QF     + +   +   +  ISL KG+
Sbjct: 130 YFPEHKLPENVIATTDARAALLGADYCLHAVPVQFSSSFLEGIADSVDPTLPFISLSKGL 189

Query: 157 EVKMEGPCMISSLISSQL---RVNCCVLMGANIANEIAVEKFSEATVGYKGNREIAEKWV 213
           E+      M+S +I   L   R     L G + A E+ + K   A V    ++++A    
Sbjct: 190 ELNTFR--MMSQIIPQALGNPRQPFIALSGPSFALEL-MNKLPTAMVVASKDKKLANATQ 246

Query: 214 QLFSTPYFMVTPVQDVEGVELCGTLKNVVALAAGFVDGLEMGNNTKAAIMRIGLREMRAF 273
           QL ++ +  ++   DV GVE+ G LKNV+A+AAG V+G+ +GNN+ AA++  G  E+R  
Sbjct: 247 QLLASSHLRISTSSDVTGVEIAGALKNVLAIAAGIVEGMNLGNNSMAALVAQGCSEIRWL 306

Query: 274 SKLLFSSVKDSTFFESCGVADVITTC 299
           +  +    K +T     G  D++ TC
Sbjct: 307 ATKM--GAKSTTIMGLSGTGDIMLTC 330


>GSVIVT01033233001 assembled CDS
          Length = 463

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 115/266 (43%), Gaps = 61/266 (22%)

Query: 38  KVTVVGSGNWGSVAAKLIASNTLKLTSFHDEVRMWVFEEALPSGEKLT------------ 85
           K+  VG+G WGSV A L+  N      F ++V++ ++     + +K T            
Sbjct: 44  KIVGVGAGAWGSVFAALLQDN---YGQFREKVQIRIWRRPGRTVDKATAEHLFEVINSRE 100

Query: 86  DVINRTNENVKYLPGI--KLGK---------------NVVADP--------DLDNAVRDA 120
           DV+ R      YL  +  +LG                N++  P        +L  AV DA
Sbjct: 101 DVLRRLIRRCAYLKYVEARLGDRTLLADEILKDGFCLNMIHTPLCPLKVVTNLQEAVWDA 160

Query: 121 NMLVFVTPHQFMEGICKRLVGKIKEGVEA---ISLIKGMEVKMEG-PCMIS--SLISSQL 174
           +++V   P      + + +    KE +     ISL KG+E  +E  P +I+   +I+   
Sbjct: 161 DIVVNGLPSTETREVFEEINHYWKERITVPIIISLSKGIEAALEPLPHIITPTQMINRAT 220

Query: 175 RV---NCCVLMGANIANEIAVEKFSEATV-GYKGNREIAEKW----VQLFSTPYFMVTPV 226
            V   N   L G NIA+EI  ++++ A + G       AEKW     +    P+F+V   
Sbjct: 221 GVAMENILYLGGPNIASEIYNKEYANARICG-------AEKWRKPLAKFLRQPHFIVWDN 273

Query: 227 QDVEGVELCGTLKNVVALAAGFVDGL 252
            D+   E+ G LKNV A+ AG V  L
Sbjct: 274 SDLVTHEVMGGLKNVYAIGAGMVAAL 299