Jatropha Genome Database

JcCB0047491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0047491.10 + phase: 0 /partial
         (153 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003986001 assembled CDS                                       252   6e-68

>GSVIVT01003986001 assembled CDS
          Length = 195

 Score =  252 bits (643), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 117/153 (76%), Positives = 129/153 (84%)

Query: 1   LREHLEKAGCGVEENLIKAINCDXXXXXXXXXXXXXXVCSNHMNIQDEVNQVVIHELIHA 60
           LRE+LEK+GC + +  IKAI C+              VCSNHMNIQDEVNQVVIHELIHA
Sbjct: 43  LRENLEKSGCAIGDKFIKAIYCNTKVSGGYARGEGIVVCSNHMNIQDEVNQVVIHELIHA 102

Query: 61  YDDCRAKNLDWANCAHHACSEIRASHLSGDCHYKRELLRGYMKMRGHGQECVKRRAMKSV 120
           YDDCRA NLDW NCAHHACSEIR+ HLSGDCH+KRELLRGY+K+RGHGQECV+RR MKSV
Sbjct: 103 YDDCRAANLDWTNCAHHACSEIRSGHLSGDCHFKRELLRGYLKVRGHGQECVRRRVMKSV 162

Query: 121 IANPYCSEAAAKDAVEAVWDVCYNDTKPFDRAP 153
            ANP+CSEAAAKDA+EAVWDVCYNDTKPFDRAP
Sbjct: 163 TANPHCSEAAAKDAMEAVWDVCYNDTKPFDRAP 195