Jatropha Genome Database

JcCB0046961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0046961.10 + phase: 0 /partial
         (249 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036171001 assembled CDS                                       334   3e-92
GSVIVT01036173001 assembled CDS                                       273   5e-74
GSVIVT01033433001 assembled CDS                                       153   9e-38
GSVIVT01013560001 assembled CDS                                        84   7e-17
GSVIVT01013562001 assembled CDS                                        72   4e-13
GSVIVT01030325001 assembled CDS                                        58   5e-09
GSVIVT01013561001 assembled CDS                                        57   8e-09

>GSVIVT01036171001 assembled CDS
          Length = 490

 Score =  334 bits (856), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 167/249 (67%), Positives = 192/249 (77%), Gaps = 1/249 (0%)

Query: 1   MGEMLVGHLKGNLSVVIVRPTIVTSTYKEPFPGWVEGVRTIDSLAVGYAKGRLTCFLGDI 60
           MGEML+GHLK NL + I+RPTIV+STYKEPFPGWVEG+RTIDS AVGY KGRLT FLGDI
Sbjct: 243 MGEMLLGHLKENLPLAILRPTIVSSTYKEPFPGWVEGIRTIDSFAVGYGKGRLTFFLGDI 302

Query: 61  NGIVDVIPGDXXXXXXXXXXXXXXXEPSDNAIYQVGSSVRHPVRYSNLQDYGLSYFTRKP 120
             IVDVIP D               +P +  IYQVGSSV++PVRYSNLQD+GL YFT+ P
Sbjct: 303 EAIVDVIPADMVVNSMIVAMAAHANQPCE-VIYQVGSSVKNPVRYSNLQDFGLRYFTKNP 361

Query: 121 WIXXXXXXXXXXXXXXLETMNSFHRYMALRYLLLLKGLEFANTAFCNHFEGMYSDLSRKI 180
           WI              L TM+SFHRYMALRYLLLLKGL+F NTAFC +F G Y+DL+R+I
Sbjct: 362 WINKDGKAVKVGKVTVLSTMDSFHRYMALRYLLLLKGLQFVNTAFCQYFRGTYTDLNRRI 421

Query: 181 NYVMKLVELYRPYLFFKGVFDDMNTEKLRMAAKENGVENDLFYFDPKSIDWENYFTNIHI 240
            ++++L+ELY+PYLFFKGVFDDMNTEKLRMA   +G E DLFYFDPK IDWE+YF NIHI
Sbjct: 422 KFLLRLIELYKPYLFFKGVFDDMNTEKLRMAVTASGAEADLFYFDPKCIDWEDYFMNIHI 481

Query: 241 PGIVKYVFK 249
           PG VKYVFK
Sbjct: 482 PGAVKYVFK 490


>GSVIVT01036173001 assembled CDS
          Length = 490

 Score =  273 bits (699), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 129/249 (51%), Positives = 165/249 (66%), Gaps = 1/249 (0%)

Query: 1   MGEMLVGHLKGNLSVVIVRPTIVTSTYKEPFPGWVEGVRTIDSLAVGYAKGRLTCFLGDI 60
           MGEML+G  K NL +VI+RPTI+TSTY EPF GW+EG+RTID++  GY KG+LTC L D 
Sbjct: 243 MGEMLLGQFKENLPLVILRPTIITSTYMEPFSGWIEGIRTIDNVLAGYCKGKLTCLLADP 302

Query: 61  NGIVDVIPGDXXXXXXXXXXXXXXXEPSDNAIYQVGSSVRHPVRYSNLQDYGLSYFTRKP 120
             I+D IPGD               +P +  IYQVGSS+++P++  +L D+   YF   P
Sbjct: 303 ECILDAIPGDMVVNCMIVAMVAHANQPCE-IIYQVGSSLKNPLKLLDLHDFFFKYFHENP 361

Query: 121 WIXXXXXXXXXXXXXXLETMNSFHRYMALRYLLLLKGLEFANTAFCNHFEGMYSDLSRKI 180
           WI                T   FH Y+A+RY+L LK L+F N   C    GM +D +RKI
Sbjct: 362 WINKDGKAVKVSKLILFSTTFVFHGYLAVRYMLPLKVLQFLNFLLCQILCGMCTDHNRKI 421

Query: 181 NYVMKLVELYRPYLFFKGVFDDMNTEKLRMAAKENGVENDLFYFDPKSIDWENYFTNIHI 240
             +M LVELY+PYLFFKG+FDD+NT+KLR+AA E+  + DLFYFDPK IDWE+YF NIHI
Sbjct: 422 KMLMYLVELYKPYLFFKGIFDDLNTDKLRLAATESSSKADLFYFDPKCIDWEDYFINIHI 481

Query: 241 PGIVKYVFK 249
           PG++KYV K
Sbjct: 482 PGVLKYVLK 490


>GSVIVT01033433001 assembled CDS
          Length = 632

 Score =  153 bits (386), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 133/250 (53%), Gaps = 8/250 (3%)

Query: 1   MGEMLVGHLKGNLSVVIVRPTIVTSTYKEPFPGWVEGVRTIDSLAVGYAKGRLTCFLGDI 60
           MGEM++  ++G + VVI+RP+++ ST +EPFPGW+EG R +D + + Y KG+LT F+ D 
Sbjct: 388 MGEMVIDQMRGEIPVVIIRPSVIESTCREPFPGWMEGNRMMDPIVLYYGKGQLTGFVADP 447

Query: 61  NGIVDVIPGDXXXXXXXXXXXXXXXE-PSDNAIYQVGSSVRHPVRYSNLQDYGLSYFTRK 119
           NG++DV+P D                  ++  IYQ+ SSV +P+ + +L  +   +F   
Sbjct: 448 NGVLDVVPADMVVNATLAAMARHGGSGKAETNIYQIASSVVNPLIFQDLTSHFYEHFKSS 507

Query: 120 PWIXXXXXXXXXXXXXXLETMNSFHRYMALRYLLLLKGLEFANTAFCNHFEGMYSDLSRK 179
           P +                ++  F  ++  R  +L  GL    +A  +    +   L + 
Sbjct: 508 PCLDNKGNPIHVPIMKLFSSIEDFSSHL-WRDAILRSGL----SAMPSQTGKLLRKLEKT 562

Query: 180 INYVMKLVELYRPYLFFKGVFDDMNTEKLRMAAKENGVENDLFYFDPKSIDWENYFTNIH 239
           +     L ++Y+PY F+ G FD+ NT++L     E   E   F FD  SIDW++Y +N+H
Sbjct: 563 VKQAKYLADIYQPYTFYGGRFDNSNTQRLMDCMCEE--EKSKFGFDVGSIDWKDYISNVH 620

Query: 240 IPGIVKYVFK 249
           IPG+ ++V K
Sbjct: 621 IPGLRRHVMK 630


>GSVIVT01013560001 assembled CDS
          Length = 571

 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 35/235 (14%)

Query: 1   MGEMLVGHLKGNLSVVIVRPTIVTSTYKEPFPGWVEGVR--------------------- 39
           MGEM++  ++G++ +VI+RPT + ST ++PFPGW++G R                     
Sbjct: 333 MGEMMINSMRGDIPLVIIRPTAIESTLEDPFPGWIQGNRYLISLPFSCPCTKSHIFSYNQ 392

Query: 40  TIDSLAVGYAKGRLTCFLGDINGIVDVIPGDXXXXXXXXXXXXXXXEPSDN-AIYQVGSS 98
            +D + + Y KG L  FL +   ++D+IP D                      +Y VGSS
Sbjct: 393 MLDPMILSYGKGNLPSFLVNPEVVIDMIPVDMVVNAIIAAMAKHGIAGKPGIKVYHVGSS 452

Query: 99  VRHPVRYSNLQDYGLSYFTRKPW-IXXXXXXXXXXXXXXLETMNSFHRYMALRYLLLLKG 157
             + +   +L  Y   +F   P  +                +M+ F  +M    +   + 
Sbjct: 453 AVNLLPLGDLFKYSYEHFICSPINMDTEGKTTDMKEMKFFSSMDDFSSHMQTEIVQQRRL 512

Query: 158 LEFANTAFCNHFEGMYSDLSRK----INYVMKLVELYRPYLFFKGVFDDMNTEKL 208
               N A           L RK    + + + L  +Y+P++FF+G FD+ NT K+
Sbjct: 513 AISGNNA--------SQRLERKCKMIVEHAINLARVYQPHMFFRGRFDNSNTHKI 559


>GSVIVT01013562001 assembled CDS
          Length = 212

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 16/214 (7%)

Query: 42  DSLAVGYAKGRLTCFLGDINGIVDVIPGDXXXXXXXXXXXXXXXEPSDN-AIYQVGSSVR 100
           D L + Y +  L  FL +   ++D+IP                        +Y VGSS  
Sbjct: 3   DPLILSYGRVNLPSFLVNPEAVIDMIPVVMVVNAIIAAMAKHGIAGKPGIKVYHVGSSAV 62

Query: 101 HPVRYSNLQDYGLSYFTRKPW-IXXXXXXXXXXXXXXLETMNSFHRYMALRYLLLLKGLE 159
           +P+   +L  +   +F   P  +                 M+ F  +M    +   +   
Sbjct: 63  NPLPLGDLFKHSYEHFICSPINMDTEGKTVDMKEMKIFSPMDDFSSHMQTEIVQQRRLTI 122

Query: 160 FANTAFCNHFEGMYSDLSRK----INYVMKLVELYRPYLFFKGVFDDMNTEKLRMAAKEN 215
             N A           L RK    + + + L  +Y+PY+FF+G FD+ NT  L     E 
Sbjct: 123 SGNKA--------SQRLERKCKMIVEHAINLARVYQPYMFFRGRFDNSNTHNLMEGMSEE 174

Query: 216 GVENDLFYFDPKSIDWENYFTNIHIPGIVKYVFK 249
             E   F  D +++DWE+Y TNIHI G+ K+V K
Sbjct: 175 --EMKRFRLDVENVDWEDYITNIHISGLKKHVMK 206


>GSVIVT01030325001 assembled CDS
          Length = 157

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 32/39 (82%)

Query: 1   MGEMLVGHLKGNLSVVIVRPTIVTSTYKEPFPGWVEGVR 39
           MGEML+ +++G + VVI+RP+ + ST +EPFPGW+EG R
Sbjct: 101 MGEMLINNMRGEIPVVIIRPSFIESTCREPFPGWMEGNR 139


>GSVIVT01013561001 assembled CDS
          Length = 311

 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 34/44 (77%)

Query: 1   MGEMLVGHLKGNLSVVIVRPTIVTSTYKEPFPGWVEGVRTIDSL 44
           MGEML+  ++G++ +VI+RPT + ST  +PFPGW++G R + SL
Sbjct: 248 MGEMLINSMRGDIPLVIIRPTAIGSTLDDPFPGWIQGNRYLISL 291