Jatropha Genome Database

JcCB0046591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0046591.10 - phase: 2 /pseudo/partial
         (361 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037591001 assembled CDS                                       424   e-119
GSVIVT01034615001 assembled CDS                                       132   2e-31
GSVIVT01011026001 assembled CDS                                       105   4e-23

>GSVIVT01037591001 assembled CDS
          Length = 1049

 Score =  424 bits (1089), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/374 (63%), Positives = 254/374 (67%), Gaps = 13/374 (3%)

Query: 1   YATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVSF 60
           YATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAV  
Sbjct: 325 YATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFV 384

Query: 61  SYXXXXXXXXXXGNLISAGTIIISVC-------CIFRFLLM-----RDSMCLEVHLEAVG 108
           +           G  +   +  ++V        C  + ++      + S        AV 
Sbjct: 385 NARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGKYSADAAGGDAAVE 444

Query: 109 WXKIHPVLQAAVGDLIFIYGGLRGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIHA 168
             +      AAVGDLIFIYGGLRGGV                              N+ A
Sbjct: 445 LTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTSAASHAAAAAAASNLQA 504

Query: 169 GRIPGRYGFVDERTRQTMSEAVPDGAVVLGNPVAPPINGDMYTDISTENAMLPGPRRTSK 228
           GR+PGRYGF+DERTRQT+ EA PDG+VVLG PVAPP+NGDMYTDISTENAML G RR SK
Sbjct: 505 GRLPGRYGFIDERTRQTIPEAAPDGSVVLGTPVAPPVNGDMYTDISTENAMLQGSRRLSK 564

Query: 229 GVEYLVXXXXXXXXXXXXXXXXXXXRQVNGEVELPDRDRGAEATPSGKQISTLIK-PDSS 287
           GVEYLV                   RQVNGEVELPDRDRGAEATPSGKQISTLIK PDS+
Sbjct: 565 GVEYLVEASAAEAEAISATLAAAKARQVNGEVELPDRDRGAEATPSGKQISTLIKMPDSA 624

Query: 288 GSNNIVPPGVRLHHRXXXXXXETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKL 347
           GSNNI P GVRLHHR      ETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKL
Sbjct: 625 GSNNIAPAGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKL 684

Query: 348 LDRQMSINSVPKKV 361
           LDRQMSINSVPKKV
Sbjct: 685 LDRQMSINSVPKKV 698


>GSVIVT01034615001 assembled CDS
          Length = 928

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/133 (57%), Positives = 89/133 (66%), Gaps = 2/133 (1%)

Query: 230 VEYLVXXXXXXXXXXXXXXXXXXXRQVNGEVE-LPDRDRGAEATPSGKQISTLIKPDSSG 288
           VEYLV                   R++NG+VE + D D G +A P+GKQ STLI P+S+ 
Sbjct: 447 VEYLVEASAAEAETISAAIAAAKARKINGDVEQIQDSDDGVKAVPTGKQNSTLIMPESAM 506

Query: 289 SNNIVPPGVRLHHRXXXXXXETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLL 348
            ++I P GVRLHHR      ETG AL  MVRQLSIDQFENEGRRV  GT E+ATAARKL 
Sbjct: 507 LSSI-PHGVRLHHRAVVVAAETGSALDCMVRQLSIDQFENEGRRVCCGTAENATAARKLF 565

Query: 349 DRQMSINSVPKKV 361
           DR+MSIN+VPKKV
Sbjct: 566 DRKMSINTVPKKV 578



 Score =  108 bits (270), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/148 (47%), Positives = 86/148 (58%), Gaps = 16/148 (10%)

Query: 1   YATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVSF 60
           YATASARSDGLLLL GGRDANSVPLASAYGLA+ RDG W WAIA GVSPSPRYQHAAV F
Sbjct: 252 YATASARSDGLLLLFGGRDANSVPLASAYGLARDRDGHWAWAIALGVSPSPRYQHAAV-F 310

Query: 61  SYXXXXXXXXXXG--------NLISAGTIIISVCCIFRFLLMRDSMCLEVHLEAVGWXKI 112
            +          G        + I+       V C  + ++   +        A G    
Sbjct: 311 VHAQLHVSGGALGGGRMVEDRSSIAVLDTAAGVWCDTKAIVT-SARAGRYSANATGGDTS 369

Query: 113 HPVLQ------AAVGDLIFIYGGLRGGV 134
             +++      AAVGDL+++YGGLR G+
Sbjct: 370 FELIRRCRHAAAAVGDLVYVYGGLRCGM 397


>GSVIVT01011026001 assembled CDS
          Length = 888

 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 80/144 (55%), Gaps = 11/144 (7%)

Query: 1   YATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVSF 60
           YATASARSDG+ LLCGGRD++  PLA AYGL  HR+G+WEW +APGVSPSPRYQHAAV  
Sbjct: 209 YATASARSDGMFLLCGGRDSSGAPLADAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFV 268

Query: 61  SYXXXXXXXXXXGNLISAGTIIISVC-CIFRFLLMRDSMCLEVHLEAVGWXKIHPVLQ-- 117
                       G     G   ++V        L R+ +     +   G  +  P L+  
Sbjct: 269 GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSPRINK-GHTEYDPSLELM 327

Query: 118 -------AAVGDLIFIYGGLRGGV 134
                  A+VG  I+IYGGL+G +
Sbjct: 328 RRCRHAAASVGVRIYIYGGLKGDM 351



 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 50/101 (49%), Gaps = 10/101 (9%)

Query: 267 RGAEATPSGKQISTLIKPDSSGSNNIVPPG------VRLHHRXXXXXXETGGALGGMVRQ 320
           + A A PS +   T +  D+S +      G      VRLH R      E  G LGGMVRQ
Sbjct: 441 QAASAVPSDE---TSVSDDNSQAAETTSDGSDTEADVRLHPRAVVVAKEAVGNLGGMVRQ 497

Query: 321 LSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKV 361
           LS+DQFENE RR+     + +   RK   RQ S   + KK+
Sbjct: 498 LSLDQFENESRRMVPMNNDLSYPTRKFT-RQKSPQGLHKKI 537