Jatropha Genome Database
- JcCB0045901.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0045901.20 - phase: 2 /partial
(209 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01028516001 assembled CDS 171 2e-43
GSVIVT01031338001 assembled CDS 74 7e-14
GSVIVT01009467001 assembled CDS 69 1e-12
GSVIVT01022111001 assembled CDS 68 2e-12
GSVIVT01028238001 assembled CDS 63 8e-11
GSVIVT01020814001 assembled CDS 63 9e-11
GSVIVT01007914001 assembled CDS 59 1e-09
GSVIVT01023585001 assembled CDS 59 2e-09
GSVIVT01018165001 assembled CDS 57 5e-09
GSVIVT01015006001 assembled CDS 56 1e-08
GSVIVT01018094001 assembled CDS 54 6e-08
GSVIVT01021787001 assembled CDS 53 9e-08
>GSVIVT01028516001 assembled CDS
Length = 479
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/198 (48%), Positives = 118/198 (59%), Gaps = 4/198 (2%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQXXXXXXXXXXXXFSGIQQYXX 60
INEKM+ALQ IPRCNKSDKASMLDEAIEYLKSLQLQVQ + G+QQY
Sbjct: 286 INEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMMYPGVQQYMP 345
Query: 61 XXXXXXXXXXXXXXXXNRPMMPFPNVXXXXXXXXXXXXXXXXXRFPMPAFHMPPVPTPGP 120
NRPMMPFP+V R+PMPAFHMP + P
Sbjct: 346 QMGMGMGMGMGMEMGMNRPMMPFPSVLGGSTLPTTAAAAHLGQRYPMPAFHMPHM--AAP 403
Query: 121 DPSRIQAANQSDPMLSAISAQTSHQPGVPSFADXXXXXXXXXXXXXXVSQNQVMTRPSTS 180
D SRIQA NQSDP+L+++ Q+S+QP VP+FAD +QNQ M + +TS
Sbjct: 404 DSSRIQANNQSDPVLNSLGTQSSNQPRVPNFADPYLQYLQQMQMPP--AQNQAMGQQNTS 461
Query: 181 KPGTNQGPENVDNHQSGR 198
KP T++G EN++NH+SGR
Sbjct: 462 KPSTSKGTENLENHRSGR 479
>GSVIVT01031338001 assembled CDS
Length = 573
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/39 (87%), Positives = 35/39 (89%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INEKMRALQ IP CNK DKASMLDEAIEYLK+LQLQVQ
Sbjct: 342 INEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQ 380
>GSVIVT01009467001 assembled CDS
Length = 369
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 35/39 (89%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INEKM+ALQ+ IP NK+DKASMLDEAIEYLK LQLQVQ
Sbjct: 203 INEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 241
>GSVIVT01022111001 assembled CDS
Length = 394
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 35/39 (89%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INEKM+ALQ+ IP NK+DKASMLDEAIEYLK LQLQVQ
Sbjct: 155 INEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 193
>GSVIVT01028238001 assembled CDS
Length = 200
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 33/39 (84%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
IN+KMR+LQ IP C K DK S+LDEAI+YLK+LQLQVQ
Sbjct: 30 INKKMRSLQELIPNCKKVDKISILDEAIDYLKTLQLQVQ 68
>GSVIVT01020814001 assembled CDS
Length = 544
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 40/58 (68%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQXXXXXXXXXXXXFSGIQQY 58
INEKM+ALQ IP NKSDKASMLDEAIEYLKSLQLQ+Q F G+Q Y
Sbjct: 354 INEKMKALQELIPHSNKSDKASMLDEAIEYLKSLQLQLQLMWMGGGVAPMMFPGVQHY 411
>GSVIVT01007914001 assembled CDS
Length = 385
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
IN+KM+ LQ +P +K+DKASMLDE IEYLK LQ QVQ
Sbjct: 201 INQKMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQ 239
>GSVIVT01023585001 assembled CDS
Length = 282
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
I E+M+ALQ +P NK+DKASMLDE I+Y+K LQLQV+
Sbjct: 126 IAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVK 164
>GSVIVT01018165001 assembled CDS
Length = 211
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
IN++M+ LQ +P +K+DKASMLDE IEYLK LQ QVQ
Sbjct: 44 INQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQ 82
>GSVIVT01015006001 assembled CDS
Length = 389
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
I E+M+ LQ +P NK+DKASMLDE IEY+K LQLQV+
Sbjct: 171 IAERMKNLQELVPNSNKTDKASMLDEIIEYVKFLQLQVK 209
>GSVIVT01018094001 assembled CDS
Length = 313
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 32/39 (82%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
I E+M+ALQ +P NK+D+A+MLDE ++Y+K L+LQV+
Sbjct: 173 IAERMKALQELVPSSNKTDRAAMLDEIVDYVKFLRLQVK 211
>GSVIVT01021787001 assembled CDS
Length = 261
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 32/39 (82%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
I E+M+ALQ +P NK+D+A+MLDE ++Y+K L+LQV+
Sbjct: 121 IAERMKALQELVPSANKTDRAAMLDEIVDYVKFLRLQVK 159