Jatropha Genome Database

JcCB0045301.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0045301.20 + phase: 2 /pseudo/partial
         (106 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037435001 assembled CDS                                        66   4e-12
GSVIVT01037297001 assembled CDS                                        64   1e-11
GSVIVT01032687001 assembled CDS                                        62   6e-11
GSVIVT01011226001 assembled CDS                                        62   6e-11
GSVIVT01037300001 assembled CDS                                        61   1e-10
GSVIVT01032694001 assembled CDS                                        60   2e-10

>GSVIVT01037435001 assembled CDS
          Length = 429

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 43/60 (71%), Gaps = 4/60 (6%)

Query: 46  TSKNLPVPP----WPVMGNIPEMIRYRPTFRWVYQFMKEMKTDICLIRLGRTNVIPVNCP 101
           +SK + +PP    WP++ N+P++++ +P FRW++ FMKEM T+I  I+LG  +VIPV  P
Sbjct: 48  SSKGMHLPPGPAPWPLLRNLPDLLKNKPVFRWIHGFMKEMNTEIACIQLGNVHVIPVISP 107


>GSVIVT01037297001 assembled CDS
          Length = 325

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 10/73 (13%)

Query: 33  YSYKTSKESCS*RTSKNLPVPP----WPVMGNIPEMIRYRPTFRWVYQFMKEMKTDICLI 88
           + +KTS  S      K + +PP    WP++ N+P ++  +PTFRW++ FMKEM T+I  I
Sbjct: 126 FKFKTSTNS------KAMLLPPGPAPWPLVRNLPHLLNNKPTFRWIHGFMKEMNTEIACI 179

Query: 89  RLGRTNVIPVNCP 101
           +LG  +VIPV  P
Sbjct: 180 QLGNVHVIPVTSP 192


>GSVIVT01032687001 assembled CDS
          Length = 484

 Score = 61.6 bits (148), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 37/53 (69%)

Query: 54  PWPVMGNIPEMIRYRPTFRWVYQFMKEMKTDICLIRLGRTNVIPVNCPITASD 106
           PWP++GN+PE++  +P FRW+   ++E+ T+I  I+LG  +VIPV  P  A D
Sbjct: 68  PWPLVGNLPELLTKKPVFRWILGLLEELNTEIACIKLGNVHVIPVISPEIARD 120


>GSVIVT01011226001 assembled CDS
          Length = 247

 Score = 61.6 bits (148), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 42/59 (71%), Gaps = 4/59 (6%)

Query: 47  SKNLPVPP----WPVMGNIPEMIRYRPTFRWVYQFMKEMKTDICLIRLGRTNVIPVNCP 101
           SK++ +PP    WP++ N+P ++  +PTFRW++ FMKEM T+I  I+LG  +VIPV  P
Sbjct: 57  SKSMMLPPGPAPWPLVRNLPHLLNRKPTFRWIHGFMKEMNTEIECIQLGDVHVIPVTSP 115


>GSVIVT01037300001 assembled CDS
          Length = 264

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 4/59 (6%)

Query: 47  SKNLPVPP----WPVMGNIPEMIRYRPTFRWVYQFMKEMKTDICLIRLGRTNVIPVNCP 101
           SK++ +PP    WP++ N+P ++  +PTFRW++  MKEM T+I  I+LG  +VIPV  P
Sbjct: 73  SKSMMLPPGPAPWPLVRNLPHLLNKKPTFRWIHGLMKEMNTEIACIQLGDVHVIPVTSP 131


>GSVIVT01032694001 assembled CDS
          Length = 576

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 51  PVP-PWPVMGNIPEMIRYRPTFRWVYQFMKEMKTDICLIRLGRTNVIPVNCPITASD 106
           P P PWP++GN+PE+   +P FRW+   ++E+ T+I  I+LG  +VIPV  P  A +
Sbjct: 133 PGPTPWPLVGNLPELFTKKPVFRWILGLLEELNTEIACIKLGNVHVIPVISPEIARE 189