Jatropha Genome Database

JcCB0045051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0045051.10 + phase: 0 /partial
         (143 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025882001 assembled CDS                                       175   6e-45
GSVIVT01025879001 assembled CDS                                       174   1e-44
GSVIVT01025881001 assembled CDS                                       170   2e-43
GSVIVT01037549001 assembled CDS                                       164   2e-41
GSVIVT01025282001 assembled CDS                                        57   3e-09

>GSVIVT01025882001 assembled CDS
          Length = 204

 Score =  175 bits (444), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 89/143 (62%), Positives = 98/143 (68%), Gaps = 1/143 (0%)

Query: 1   MEEERETGNKNSLVFAVNGKRFELSSVDPSTTLLEFLRTQTSFKSXXXXXXXXXXXXXXX 60
           ME+   T N NSLVFAVNGKRFE+S++ PSTTLLEFLR+ T FK                
Sbjct: 1   MEQSESTVN-NSLVFAVNGKRFEVSTIHPSTTLLEFLRSHTPFKGAKLSCGEGGCGACVV 59

Query: 61  XXSKYNPVLDQVEDXXXXXXXXXXXXINRASITTSEGLGNSKDGFHSIHQRFSGFHASQC 120
             SKYNPVLDQV+D            IN  SITT+EGLGN+KDGFH IH+RFSGFHASQC
Sbjct: 60  LLSKYNPVLDQVDDFTVSSCLTLLCSINGCSITTTEGLGNTKDGFHPIHERFSGFHASQC 119

Query: 121 GFCTPGMCMSLFGALVKAEKTDR 143
           GFCTPGMCMSLF ALV AEK  R
Sbjct: 120 GFCTPGMCMSLFSALVNAEKILR 142


>GSVIVT01025879001 assembled CDS
          Length = 1380

 Score =  174 bits (442), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/143 (60%), Positives = 99/143 (69%), Gaps = 1/143 (0%)

Query: 1   MEEERETGNKNSLVFAVNGKRFELSSVDPSTTLLEFLRTQTSFKSXXXXXXXXXXXXXXX 60
           ME+   T N NSLVFAVNGKRFE+S++ PSTT+LEFLR+ T FK                
Sbjct: 1   MEQSESTVN-NSLVFAVNGKRFEVSTIHPSTTVLEFLRSHTPFKGPKLSCGEGGCGACVV 59

Query: 61  XXSKYNPVLDQVEDXXXXXXXXXXXXINRASITTSEGLGNSKDGFHSIHQRFSGFHASQC 120
             SKYNP+LDQ++D            +N  SITT+EGLGNSKDGFH IH+RFSGFHASQC
Sbjct: 60  LLSKYNPILDQLDDCTVSSCLTLLCSVNGCSITTTEGLGNSKDGFHPIHERFSGFHASQC 119

Query: 121 GFCTPGMCMSLFGALVKAEKTDR 143
           GFCTPGMCMSLF ALV AEKT R
Sbjct: 120 GFCTPGMCMSLFSALVNAEKTPR 142


>GSVIVT01025881001 assembled CDS
          Length = 1096

 Score =  170 bits (431), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/143 (60%), Positives = 97/143 (67%), Gaps = 1/143 (0%)

Query: 1   MEEERETGNKNSLVFAVNGKRFELSSVDPSTTLLEFLRTQTSFKSXXXXXXXXXXXXXXX 60
           ME+   T N N LVFAVNGKRFE+S++ PSTT+LEFLR+ T FK                
Sbjct: 1   MEQSESTVN-NCLVFAVNGKRFEVSTIHPSTTVLEFLRSHTPFKGPKLSCGEGGCGACVV 59

Query: 61  XXSKYNPVLDQVEDXXXXXXXXXXXXINRASITTSEGLGNSKDGFHSIHQRFSGFHASQC 120
             SKYNPV DQV+D            +N  SITT+EGLGN+KDGFH IH+RFSGFHASQC
Sbjct: 60  LLSKYNPVHDQVDDCTVSSCLTLLCSVNGCSITTTEGLGNTKDGFHPIHERFSGFHASQC 119

Query: 121 GFCTPGMCMSLFGALVKAEKTDR 143
           GFCTPGMCMSLF ALV AEKT R
Sbjct: 120 GFCTPGMCMSLFSALVNAEKTPR 142


>GSVIVT01037549001 assembled CDS
          Length = 1219

 Score =  164 bits (414), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/143 (57%), Positives = 96/143 (67%), Gaps = 1/143 (0%)

Query: 1   MEEERETGNKNSLVFAVNGKRFELSSVDPSTTLLEFLRTQTSFKSXXXXXXXXXXXXXXX 60
           ME+   T N + LVF+VNG+RFE+S++ PSTTLLEFLR+ T FK                
Sbjct: 1   MEQSEPTVN-DCLVFSVNGERFEVSTIHPSTTLLEFLRSHTPFKGAKLSCGEGGCGACVV 59

Query: 61  XXSKYNPVLDQVEDXXXXXXXXXXXXINRASITTSEGLGNSKDGFHSIHQRFSGFHASQC 120
             SKY+PVLDQV+D            IN  SITT+EGLGN K+GFH IH+RFSGFHASQC
Sbjct: 60  LLSKYDPVLDQVDDFAVSSCLTLLCSINGCSITTTEGLGNIKNGFHPIHERFSGFHASQC 119

Query: 121 GFCTPGMCMSLFGALVKAEKTDR 143
           GFCTPGMCMS F ALV A+KT R
Sbjct: 120 GFCTPGMCMSFFSALVNAQKTQR 142


>GSVIVT01025282001 assembled CDS
          Length = 1301

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)

Query: 92  ITTSEGLGNSKDGFHSIHQRFSGFHASQCGFCTPGMCMSLFGALVKAEKT 141
           + T EG+GN ++G H I +  +  H SQCGFCTPG  MS++ AL+++ +T
Sbjct: 98  VITVEGIGNRRNGLHPIQESLALSHGSQCGFCTPGFIMSMY-ALLRSSQT 146