Jatropha Genome Database

JcCB0044721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0044721.10 - phase: 0 
         (304 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025734001 assembled CDS                                       113   9e-26
GSVIVT01031502001 assembled CDS                                       103   1e-22
GSVIVT01005132001 assembled CDS                                        75   4e-14
GSVIVT01008573001 assembled CDS                                        69   3e-12
GSVIVT01038662001 assembled CDS                                        69   4e-12
GSVIVT01005129001 assembled CDS                                        66   2e-11
GSVIVT01000907001 assembled CDS                                        61   8e-10
GSVIVT01024022001 assembled CDS                                        57   1e-08
GSVIVT01025864001 assembled CDS                                        53   2e-07
GSVIVT01018723001 assembled CDS                                        51   6e-07
GSVIVT01011778001 assembled CDS                                        49   3e-06
GSVIVT01008271001 assembled CDS                                        48   5e-06
GSVIVT01026762001 assembled CDS                                        48   7e-06
GSVIVT01011777001 assembled CDS                                        47   8e-06

>GSVIVT01025734001 assembled CDS
          Length = 345

 Score =  113 bits (283), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 87/167 (52%), Gaps = 9/167 (5%)

Query: 1   MDMHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTGKVDPEKVKARLEEKTKKKVEIV 60
           +D+HCEGCAKKVRR V+  +GVE VK D   NK+TVTGK DP K++ +LEEKTKK+V ++
Sbjct: 36  IDLHCEGCAKKVRRYVRKFDGVEDVKVDSASNKVTVTGKADPVKLREKLEEKTKKEVALI 95

Query: 61  S---------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVLKIRTHCDGC 111
           S                                              TVVLKIR HCDGC
Sbjct: 96  SPIPKKEAKDGGAADKKSDDKSEKKSDEKKSDEKKADEKKPKETPVSTVVLKIRLHCDGC 155

Query: 112 XXXXXXXXXXXXXXXNVTVDGAKDLVTVTGTMDVKELAPYLTEKLKR 158
                           VTVD  KDLVTVTG MDVKEL PYL EKL+R
Sbjct: 156 IHKIKKIISKSKGVKTVTVDSQKDLVTVTGPMDVKELIPYLKEKLRR 202


>GSVIVT01031502001 assembled CDS
          Length = 313

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 80/159 (50%), Gaps = 1/159 (0%)

Query: 1   MDMHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTGKVDPEKVKARLEEKTKKKVEIV 60
           +D+HCEGC  KV + +K L+GV   K D + NK+TV GKVDP  ++ +LE+KTKKKVE++
Sbjct: 36  VDLHCEGCGSKVVKYLKGLDGVANAKADSDTNKVTVIGKVDPSMLREKLEQKTKKKVELL 95

Query: 61  S-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVLKIRTHCDGCXXXXXXXX 119
           S A                                    T VLKI  HC GC        
Sbjct: 96  SPAPKKDKKNDDGGGGDKKAEKKPEKKAEDKKPKEPPVTTAVLKIDLHCAGCIDKIQRTV 155

Query: 120 XXXXXXXNVTVDGAKDLVTVTGTMDVKELAPYLTEKLKR 158
                  + ++D  K+LVTVTGTMDVK L   L ++LKR
Sbjct: 156 SKTKGVESKSIDKQKNLVTVTGTMDVKALVESLKDRLKR 194



 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%)

Query: 1   MDMHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTGKVDPEKVKARLEEKTKKKVEIV 60
           +D+HC GC  K++R V   +GVE+   D + N +TVTG +D + +   L+++ K+ VEIV
Sbjct: 140 IDLHCAGCIDKIQRTVSKTKGVESKSIDKQKNLVTVTGTMDVKALVESLKDRLKRPVEIV 199


>GSVIVT01005132001 assembled CDS
          Length = 267

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 9/160 (5%)

Query: 1   MDMHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTGK-VDPEKVKARLEEKTKKKVEI 59
           +DMHCE CA+KV RA+K  +GVE V TD + +K+ V GK  DP KV  R+++K+ +KVE+
Sbjct: 41  VDMHCEACARKVARALKGFQGVEDVTTDSKASKVVVKGKTADPIKVCERIQKKSGRKVEL 100

Query: 60  VSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVLKIRTHCDGCXXXXXXXX 119
           +S                                     T VLK+  HC+ C        
Sbjct: 101 ISP--------LPKPPEENKEEPKEAKEEEKKEEPPPVITAVLKVYMHCEACAQVLQRRI 152

Query: 120 XXXXXXXNVTVDGAKDLVTVTGTMDVKELAPYLTEKLKRN 159
                  +VT D A D   V G ++  +L  Y+ +K ++ 
Sbjct: 153 RKFPGVESVTTDVANDQAIVKGIIEPAKLVDYVNKKTRKQ 192



 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 37/58 (63%)

Query: 3   MHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTGKVDPEKVKARLEEKTKKKVEIV 60
           MHCE CA+ ++R ++   GVE+V TD   ++  V G ++P K+   + +KT+K+  IV
Sbjct: 139 MHCEACAQVLQRRIRKFPGVESVTTDVANDQAIVKGIIEPAKLVDYVNKKTRKQAYIV 196


>GSVIVT01008573001 assembled CDS
          Length = 274

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 65/154 (42%), Gaps = 7/154 (4%)

Query: 3   MHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTG-KVDPEKVKARLEEKTKKKVEIVS 61
           MHCEGCA+KVRR +K  +GVE V TDC+  K+ V G K DP KV  R++ K  ++VE++S
Sbjct: 52  MHCEGCARKVRRCLKGFDGVEDVITDCKSQKVVVKGEKADPLKVLERVQRKNHRQVELLS 111

Query: 62  AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVLKIRTHCDGCXXXXXXXXXX 121
                                                TVVLK+  HC+ C          
Sbjct: 112 P------IPKPPAEDEKKPEEKEAPKPEEKKEEPQVITVVLKVHMHCEACAQEIQKRIGR 165

Query: 122 XXXXXNVTVDGAKDLVTVTGTMDVKELAPYLTEK 155
                    D     VTV G  D  +L  Y+ ++
Sbjct: 166 MKGVEFAEPDLKASQVTVKGVFDPPKLVEYVYKR 199


>GSVIVT01038662001 assembled CDS
          Length = 266

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 15/159 (9%)

Query: 1   MDMHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTGKVDPEKVKARLEEKTKKKVEIV 60
           +D+HC GCAKK+ R++  + GVE V  D   N++T+ G V+P+ V  R+ +KTK++ +++
Sbjct: 50  VDLHCVGCAKKIERSLMKIRGVEEVMIDMAQNQVTIKGIVEPQAVCNRIMKKTKRRAKVL 109

Query: 61  SAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVLKIRTHCDGCXXXXXXXXX 120
           S                                     TV L +  HC+ C         
Sbjct: 110 SP---------------LPEAEGEPMPEVVSSQVSGLTTVELNVNMHCEACAAQLKRKIL 154

Query: 121 XXXXXXNVTVDGAKDLVTVTGTMDVKELAPYLTEKLKRN 159
                     + +   VTVTGTMD   L  Y+  + K+ 
Sbjct: 155 KMRGVQTAETELSTSKVTVTGTMDADRLVDYVYRRTKKQ 193



 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 41/60 (68%)

Query: 1   MDMHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTGKVDPEKVKARLEEKTKKKVEIV 60
           ++MHCE CA +++R +  + GV+T +T+   +K+TVTG +D +++   +  +TKK+  IV
Sbjct: 138 VNMHCEACAAQLKRKILKMRGVQTAETELSTSKVTVTGTMDADRLVDYVYRRTKKQARIV 197


>GSVIVT01005129001 assembled CDS
          Length = 839

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 1   MDMHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTGK-VDPEKVKARLEEKTKKKVEI 59
           +DMHCE CA+KV RA+K  +GVE V TD + +K+ V GK  DP KV  R+++K+ +KVE+
Sbjct: 41  VDMHCEACARKVARALKGFQGVEDVTTDSKASKVVVKGKTADPIKVCERIQKKSGRKVEL 100

Query: 60  VS 61
           +S
Sbjct: 101 IS 102


>GSVIVT01000907001 assembled CDS
          Length = 288

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 16/151 (10%)

Query: 3   MHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTG-KVDPEKVKARLEEKTKKKVEIVS 61
           MHCEGCA KV ++++  +GVE V+TD + +K+ V G K DP KV  R+++K  K VE++S
Sbjct: 1   MHCEGCANKVLKSLRGFDGVEEVETDRKNHKVIVKGEKADPLKVLERVKKKCGKNVELLS 60

Query: 62  AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVLKIRTHCDGCXXXXXXXXXX 121
                                                 VVLK+  HC+ C          
Sbjct: 61  P---------------IPKAKEPQENKKEAKEEPRVMIVVLKVYMHCENCAVEIKKAILK 105

Query: 122 XXXXXNVTVDGAKDLVTVTGTMDVKELAPYL 152
                 V  D     VTV G  D  +L  +L
Sbjct: 106 MKGVRTVEPDTKNSTVTVKGVFDPPKLIDHL 136


>GSVIVT01024022001 assembled CDS
          Length = 155

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 1  MDMHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTGKVDPEKVKARLEEKTKKKVEI 59
          + M CEGC +KVRRAV+ ++GV  V    + +KLTV G VDP KV +R+  +T KK E+
Sbjct: 33 VKMDCEGCERKVRRAVEGMKGVTQVDVVPKHHKLTVVGYVDPAKVVSRVAHRTGKKAEL 91


>GSVIVT01025864001 assembled CDS
          Length = 162

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 3  MHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTGKVDPEKVKARLEEKTKKKVEI 59
          M CEGC K++RRA+  L GV+ +  D +  K+TVTG VD  +V  ++  +T +K E 
Sbjct: 38 MDCEGCEKRIRRAISKLSGVDHLDIDMDKQKVTVTGYVDQRQV-LKVVRRTGRKAEF 93


>GSVIVT01018723001 assembled CDS
          Length = 121

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 39/54 (72%)

Query: 3  MHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTGKVDPEKVKARLEEKTKKK 56
          M CEGC ++VR++V+ ++GV  V  + + NKLTV G V+P+KV  R++ +T K+
Sbjct: 1  MDCEGCERQVRKSVEGMKGVTQVVIEPKLNKLTVVGYVEPKKVLHRVKHRTGKR 54


>GSVIVT01011778001 assembled CDS
          Length = 147

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 37/53 (69%)

Query: 3  MHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTGKVDPEKVKARLEEKTKK 55
          M C+GC ++V+ AV  ++GV+TV  + + +++TV+G VDP KV  R++   K+
Sbjct: 33 MDCDGCERRVKNAVSSMKGVKTVDINRKQSRVTVSGFVDPNKVLKRVKSTGKR 85


>GSVIVT01008271001 assembled CDS
          Length = 203

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 41/60 (68%)

Query: 1   MDMHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTGKVDPEKVKARLEEKTKKKVEIV 60
           +++ C GC +KVRRA+ +++ +ET   + +  ++TV G+  P+ V  +L +KT ++VEI+
Sbjct: 105 INIDCNGCYRKVRRALLNIQELETHLIEMKQCRVTVCGRFIPQDVAIKLRKKTNRRVEIL 164


>GSVIVT01026762001 assembled CDS
          Length = 222

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 11/157 (7%)

Query: 1   MDMHCEGCAKKVRR-AVKHLEGVETVKTDCEGNKLTVTGKVDPEKVKARLEEKTKKKVEI 59
           +++HC  CA+++++  ++   G+  V  D E  ++ V G +  +K++ R+E+ +KKKVEI
Sbjct: 22  VNLHCRQCAREIQKPLLRAQAGIHKVDADIEAGEIRVKGLIHTKKIQERIEKLSKKKVEI 81

Query: 60  VSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVLKIRTHCDGCXXXXXXXX 119
           VS                                     T  +K+  HC+ C        
Sbjct: 82  VSP----------QAKIKDSVATEKTVKVNTKEVSTIVRTTTIKVHMHCEKCEHDLRRKL 131

Query: 120 XXXXXXXNVTVDGAKDLVTVTGTMDVKELAPYLTEKL 156
                  +V  D     +TV GT++  +L  Y+ +K+
Sbjct: 132 LRRTDIYSVKTDMKAQKLTVEGTVESDKLIGYIRKKV 168


>GSVIVT01011777001 assembled CDS
          Length = 173

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 31/42 (73%)

Query: 1  MDMHCEGCAKKVRRAVKHLEGVETVKTDCEGNKLTVTGKVDP 42
          +++HC+GC +KV++ ++ +EGV TV  D E  ++TV+G VD 
Sbjct: 19 VNIHCDGCKQKVKKLLQRIEGVYTVNIDAEQQRVTVSGSVDS 60