Jatropha Genome Database

JcCB0044401.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0044401.20 - phase: 0 /partial
         (61 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021516001 assembled CDS                                        55   5e-09
GSVIVT01007188001 assembled CDS                                        55   9e-09
GSVIVT01021519001 assembled CDS                                        52   4e-08
GSVIVT01021514001 assembled CDS                                        52   4e-08
GSVIVT01021518001 assembled CDS                                        52   7e-08

>GSVIVT01021516001 assembled CDS
          Length = 127

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 39/57 (68%), Gaps = 6/57 (10%)

Query: 1   MEEKLKSPVGTPTCSSETASQKLPSQLCRPSAGLSMKRSIQRFLQKRNHRIHATSPY 57
           MEEK ++P       S+  S  L SQL  P+ GLSMKRS+QRFLQKR +R+ ATSPY
Sbjct: 75  MEEKTRTPTA-----SDAISSSLHSQLYSPT-GLSMKRSLQRFLQKRKNRMEATSPY 125


>GSVIVT01007188001 assembled CDS
          Length = 98

 Score = 54.7 bits (130), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 41/58 (70%), Gaps = 6/58 (10%)

Query: 1  MEEKLKSPVGTPTCSSETASQKLPSQLCRPSAGLSMKRSIQRFLQKRNHRIHATSPYN 58
          MEEK ++P      +S+  S  L SQ+  P+ GLSMKRS+QRFLQKR +R+ ATSPY+
Sbjct: 46 MEEKTRTPT-----ASDAISPSLHSQIYSPT-GLSMKRSLQRFLQKRKNRMEATSPYH 97


>GSVIVT01021519001 assembled CDS
          Length = 130

 Score = 52.4 bits (124), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 35/50 (70%), Gaps = 2/50 (4%)

Query: 11  TPTCSSET-ASQKLPSQLCRPSAGLSMKRSIQRFLQKRNHRIHATSPYNH 59
           TPT S  T  S  L SQL  P+ GLSMKRS++ FLQKR +RI ATSPY H
Sbjct: 82  TPTASDVTMVSPSLQSQLYSPT-GLSMKRSLRSFLQKRKNRIEATSPYGH 130


>GSVIVT01021514001 assembled CDS
          Length = 127

 Score = 52.4 bits (124), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 6/57 (10%)

Query: 1   MEEKLKSPVGTPTCSSETASQKLPSQLCRPSAGLSMKRSIQRFLQKRNHRIHATSPY 57
           MEEK ++P      +S+  S  L SQL   + GLSMKRS+QRFLQKR +R+ ATSPY
Sbjct: 75  MEEKTRTPT-----ASDATSPSLHSQLY-SATGLSMKRSLQRFLQKRKNRMEATSPY 125


>GSVIVT01021518001 assembled CDS
          Length = 96

 Score = 51.6 bits (122), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 11/59 (18%)

Query: 1  MEEKLKSPVGTPTCSSETASQKLPSQLCRPSAGLSMKRSIQRFLQKRNHRIHATSPYNH 59
          MEE+ ++P+          S  + SQLC PS G+SMKRS+ RFLQKR +R  A SPYNH
Sbjct: 49 MEERKRAPL----------SPSMQSQLCGPS-GVSMKRSLHRFLQKRKNRREAMSPYNH 96