Jatropha Genome Database

JcCB0044401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0044401.10 + phase: 0 /partial/short
         (43 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038078001 assembled CDS                                        77   1e-15
GSVIVT01021520001 assembled CDS                                        74   1e-14
GSVIVT01016712001 assembled CDS                                        45   5e-06

>GSVIVT01038078001 assembled CDS
          Length = 371

 Score = 77.0 bits (188), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/47 (76%), Positives = 42/47 (89%), Gaps = 4/47 (8%)

Query: 1   KVLQMLREEFELTMALSGCRSLREITRNHIVADWDLP----RPVPRL 43
           KVLQMLREEFELTMALSGCRSL+EITR+HIV +W++P    RP+PRL
Sbjct: 325 KVLQMLREEFELTMALSGCRSLKEITRDHIVTEWEVPPPGSRPLPRL 371


>GSVIVT01021520001 assembled CDS
          Length = 372

 Score = 73.9 bits (180), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/45 (75%), Positives = 38/45 (84%), Gaps = 2/45 (4%)

Query: 1   KVLQMLREEFELTMALSGCRSLREITRNHIVADWDLPR--PVPRL 43
           K LQMLR+EFELTMALSGCRSL+EI+RNHI+ DWD P   P PRL
Sbjct: 328 KALQMLRDEFELTMALSGCRSLKEISRNHIMTDWDAPHILPKPRL 372


>GSVIVT01016712001 assembled CDS
          Length = 364

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 29/35 (82%)

Query: 1   KVLQMLREEFELTMALSGCRSLREITRNHIVADWD 35
           +VL+ML++E E+TMALSGC S+++I+R H+  + D
Sbjct: 324 RVLEMLKDELEITMALSGCSSVKDISRRHVRTERD 358