Jatropha Genome Database

JcCB0044081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0044081.10 - phase: 0 /pseudo/partial
         (502 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007735001 assembled CDS                                       310   1e-84
GSVIVT01013761001 assembled CDS                                       248   5e-66

>GSVIVT01007735001 assembled CDS
          Length = 988

 Score =  310 bits (793), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 157/188 (83%), Positives = 161/188 (85%), Gaps = 1/188 (0%)

Query: 196 SFDELLELSQRGDNRTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISDKKELEDYRPE 255
           SFD+LLELSQRGDNRTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTIS+ KELEDYRPE
Sbjct: 256 SFDDLLELSQRGDNRTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISENKELEDYRPE 315

Query: 256 DISLSLLRMISYNIGQISYLNAXXXXXXXXXXXXXXXXXHAYTMDTISFAVHFWSKGEAQ 315
           DISLSLLRMISYNIGQISYLNA                 HAYTMDTISFAV FWS G+AQ
Sbjct: 316 DISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSNGDAQ 375

Query: 316 AMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLGDLNEK-I 374
           AMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPY GG+IHGPPLGDLNEK I
Sbjct: 376 AMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYIGGRIHGPPLGDLNEKAI 435

Query: 375 SWMEKFVL 382
               KF L
Sbjct: 436 FHASKFTL 443



 Score =  252 bits (644), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/141 (87%), Positives = 130/141 (92%), Gaps = 1/141 (0%)

Query: 362 IHGPPLGDLNEKISWMEKFVLKGTEITAPVPMAPPGTTGLGGFEVPSSQGRTLRSDASAL 421
           I  PP G+ N  ISWMEKFV KGTEITAPVPMAP GTTGLGGFEVPSS+G TLRSDASAL
Sbjct: 541 IDAPPRGETN-LISWMEKFVQKGTEITAPVPMAPSGTTGLGGFEVPSSKGDTLRSDASAL 599

Query: 422 NVGVLHLVPTLDVFPLLADPKMYEPNTIDLSDHKELEYWFTVLSEHMPDLVDKAVASEGG 481
           N+GVLHLVPTL+VFPLLADPKMYEPNTIDL+D  ELEYWFTVLSEH+PDLVDKAVASEGG
Sbjct: 600 NIGVLHLVPTLEVFPLLADPKMYEPNTIDLADPSELEYWFTVLSEHLPDLVDKAVASEGG 659

Query: 482 TDDAKRRGDAFARAFSAHLAR 502
           TDDAKRRGDAFARAFSAHLAR
Sbjct: 660 TDDAKRRGDAFARAFSAHLAR 680



 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/80 (82%), Positives = 74/80 (92%), Gaps = 2/80 (2%)

Query: 1   MAGSLIKLVYFSRHEDRSINDKRKKTVKERLGISNGNRRSYPILGGRLHFVKFETRKINE 60
           + GSLIKLVYFSRHEDRSI+DKRK+++KERLG++NGNRRSYPILGGRLHFVKFET KINE
Sbjct: 53  IGGSLIKLVYFSRHEDRSIDDKRKRSIKERLGVTNGNRRSYPILGGRLHFVKFETSKINE 112

Query: 61  CLDFISSKQLHRGG--HRWW 78
           CLDFI+SKQLHRGG   R W
Sbjct: 113 CLDFINSKQLHRGGMDSRLW 132


>GSVIVT01013761001 assembled CDS
          Length = 419

 Score =  248 bits (633), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 126/180 (70%), Positives = 140/180 (77%)

Query: 196 SFDELLELSQRGDNRTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISDKKELEDYRPE 255
           SFDELLELS +G+NR IDMLVGDIYGGMDYSK GL+++TIASSFGK IS+ KELEDYRPE
Sbjct: 232 SFDELLELSHQGNNRVIDMLVGDIYGGMDYSKFGLASTTIASSFGKAISENKELEDYRPE 291

Query: 256 DISLSLLRMISYNIGQISYLNAXXXXXXXXXXXXXXXXXHAYTMDTISFAVHFWSKGEAQ 315
           D++ SLLRMIS NIGQISYLNA                 HAYTMDTIS AV+FWSKGEA+
Sbjct: 292 DVARSLLRMISNNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISVAVNFWSKGEAK 351

Query: 316 AMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLGDLNEKIS 375
           AMFLRHEGFLGALGAFMSYEK+  D LMVHQLVE+    A Y+G KIH    GDLN+  S
Sbjct: 352 AMFLRHEGFLGALGAFMSYEKNNYDGLMVHQLVEQVSTSASYSGDKIHSSLAGDLNDSES 411



 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 7/78 (8%)

Query: 1   MAGSLIKLVYFSRHEDRSINDKRKKTVKE----RLGISNGNRRSYPILGGRLHFVKFETR 56
           + G+LIKLVYFSR++  S++DK  K+ K     R+  SN     YPIL GR+HF KFET 
Sbjct: 32  IGGTLIKLVYFSRNDSWSVDDKGAKSPKGDSPLRVSCSN---LDYPILYGRIHFAKFETI 88

Query: 57  KINECLDFISSKQLHRGG 74
           K+NECL+FI SK+L  GG
Sbjct: 89  KVNECLEFIRSKKLLHGG 106