Jatropha Genome Database

JcCB0042121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0042121.10 + phase: 0 /partial
         (434 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008510001 assembled CDS                                       589   e-169
GSVIVT01014064001 assembled CDS                                       157   8e-39

>GSVIVT01008510001 assembled CDS
          Length = 422

 Score =  589 bits (1519), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 297/402 (73%), Positives = 334/402 (83%), Gaps = 13/402 (3%)

Query: 1   MAQLKALSPYSSLNLTFHGPKRDVLQHNFKVSSNAK-PTISLLRLGAKRSDLQGDELVVN 59
           MAQL+A+S YSS +L F  PK +   ++ K+    + P +    LG + S + G  +V N
Sbjct: 1   MAQLQAISSYSSTDLLFRRPKLESSPYHDKLYWWRQLPFVP--ELGTRGSGINGQAIVHN 58

Query: 60  A----RDIIRTSRSKAIQAVLSSDTEVETHEATKRKGLRGHLNKVVLAYSGGLDTSVIVP 115
                +++ R   ++AI+AV+SS+ E  T  A+   GLRG LNKVVLAYSGGLDTSVIVP
Sbjct: 59  NGSLFQNLTRVHSNQAIRAVVSSEKETVTSGASN-GGLRGKLNKVVLAYSGGLDTSVIVP 117

Query: 116 WLRENYGCEVVCFTADVGQXXXXXXXXXXXXXXSGACQLVVKDLQEEFVKDYIFPCLRAG 175
           WLR+NYGCEVVCFTADVGQ              SGACQLVVKDL+EEFVKDYIFPCLRAG
Sbjct: 118 WLRQNYGCEVVCFTADVGQGIKELEGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAG 177

Query: 176 AIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVAHGCTGKGNDQ-----VRFELTFFAL 230
           AIYERKYLLGTSMARPVIAKAMVDVAKEVGADAV+HGCTGKGNDQ     VRFELTFFAL
Sbjct: 178 AIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVSHGCTGKGNDQACIEIVRFELTFFAL 237

Query: 231 NPELNVVAPWREWDIKGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPT 290
           NPELNVVAPWREW+I+GREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 
Sbjct: 238 NPELNVVAPWREWEIRGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPE 297

Query: 291 NEPKKDMYMMSVDPEDAPNQPEYVEIGIESGIPVSVNGKKLSPASLLSELNDIGGRHGVG 350
           NEPK DMYMMSVDPE AP+QPEY+EIG+ SG+PVSVNGK+LSPASLLS+LN+IGGRHG+G
Sbjct: 298 NEPKNDMYMMSVDPEHAPDQPEYIEIGMVSGLPVSVNGKELSPASLLSKLNEIGGRHGIG 357

Query: 351 RIDMVENRLVGMKSRGVYETPGGTILYSAARELESLTLDRET 392
           RIDMVENRLVGMKSRGVYETPGGTIL++AARELESLTLDRE+
Sbjct: 358 RIDMVENRLVGMKSRGVYETPGGTILFTAARELESLTLDRES 399


>GSVIVT01014064001 assembled CDS
          Length = 129

 Score =  157 bits (398), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 78/86 (90%)

Query: 197 MVDVAKEVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIKGREDAIEYAK 256
           MVDVAKEVGA AV  GCTGKGNDQVRFELTF ALNP+LN+VAPWREWDI G E+AIEYA+
Sbjct: 1   MVDVAKEVGAGAVCLGCTGKGNDQVRFELTFLALNPKLNIVAPWREWDIAGSEEAIEYAR 60

Query: 257 KHNVPVPVTKKSIYSRDRNLWHLSHE 282
           KH+VPVPVTK SI+ RDRN+WH+SHE
Sbjct: 61  KHSVPVPVTKNSIFCRDRNVWHISHE 86