Jatropha Genome Database

JcCB0041981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041981.10 + phase: 0 /partial
         (323 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025376001 assembled CDS                                       445   e-125

>GSVIVT01025376001 assembled CDS
          Length = 499

 Score =  445 bits (1145), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/308 (73%), Positives = 239/308 (77%), Gaps = 39/308 (12%)

Query: 1   MSTS---RRKLQVVSPVPADIDIANSVEPFHISEIAKDLNLSPNHYDLYGKYKAKVLLSA 57
           MSTS    RKL V+SPVPADIDIANSV PFHISEIA++LNL P+HYDLYGKYKAKVLLS 
Sbjct: 1   MSTSSKTHRKLNVLSPVPADIDIANSVVPFHISEIAQELNLDPSHYDLYGKYKAKVLLSV 60

Query: 58  LDELEGSPDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 117
           LD+L+GS DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG
Sbjct: 61  LDDLQGSGDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 120

Query: 118 IKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHESSQSDKALFNRL 177
           IK       YSQVIPMDEFNLHLTGDIH               RIFHE+SQSDKALFNRL
Sbjct: 121 IKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRL 180

Query: 178 CLPNKEGKRTFSDIMFRRLKKLGISKTKPEELTAQEIKKFARLDIDPNSITWRRVMDVND 237
                                                KKFARLDIDP+SITWRRVMDVND
Sbjct: 181 ------------------------------------FKKFARLDIDPDSITWRRVMDVND 204

Query: 238 RFLRKITVGQGPEEKGMLRETGFDISVASEIMAVLALTTSLADMRERLGNMVVGNSKAGD 297
           RFLRKIT+GQGPEEKGM+RETGFDISVASEIMAVLALTTSLADMRERLG MV+GNSKAG+
Sbjct: 205 RFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGE 264

Query: 298 PITADDLG 305
           PITADDLG
Sbjct: 265 PITADDLG 272