Jatropha Genome Database

JcCB0041831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041831.10 - phase: 0 /partial
         (258 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015121001 assembled CDS                                       416   e-117
GSVIVT01007588001 assembled CDS                                        61   6e-10
GSVIVT01036519001 assembled CDS                                        59   2e-09
GSVIVT01030994001 assembled CDS                                        54   8e-08
GSVIVT01003990001 assembled CDS                                        54   9e-08
GSVIVT01001076001 assembled CDS                                        53   1e-07
GSVIVT01003720001 assembled CDS                                        53   2e-07
GSVIVT01010118001 assembled CDS                                        53   2e-07
GSVIVT01013058001 assembled CDS                                        52   3e-07

>GSVIVT01015121001 assembled CDS
          Length = 317

 Score =  416 bits (1070), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 195/232 (84%), Positives = 212/232 (91%)

Query: 3   GPTILFFQENAGNIAHRLEMVRIMIQRLHCNVFMLSYRGYGASDGYPSQHGIAKDAQAAL 62
           GPTILFFQENAGNIAHRLEMVRIMIQRL CNVFMLSYRGYGASDGYPSQHGI  DAQAAL
Sbjct: 80  GPTILFFQENAGNIAHRLEMVRIMIQRLQCNVFMLSYRGYGASDGYPSQHGITMDAQAAL 139

Query: 63  DYLTQRTDIDSSRIVVFGRSLGGAVGALLTKNNPDKVAGLILENTFTSILDMAGVLLPFL 122
           D+L+QR DID+SRIVVFGRSLGGAVGA+LTKNNPDKVA LILENTFTSILDMAGVLLPFL
Sbjct: 140 DHLSQRIDIDTSRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSILDMAGVLLPFL 199

Query: 123 KWFIGSNHSKGPKILNFLVRSPWSTVDVIGQVKQPVLFLSGLQDEMVPPSHMQMLYAKAA 182
           KWFIG + SKGP+ILN LVRSPWST+D+IG++ QP+LFLSGLQDEMVPP HMQMLYAKAA
Sbjct: 200 KWFIGGSGSKGPRILNCLVRSPWSTIDIIGEITQPILFLSGLQDEMVPPFHMQMLYAKAA 259

Query: 183 AHNKECIFVEFPTGMHMDTWLAGGDQYWKTIQDFLKKYVPENKENESFHDDK 234
           A N++CIFVEFPTGMHMDTWLAGGD YWKTIQ F ++ VPE  E +S H+D 
Sbjct: 260 ARNRQCIFVEFPTGMHMDTWLAGGDNYWKTIQLFFEQNVPEQTEIQSSHNDN 311


>GSVIVT01007588001 assembled CDS
          Length = 359

 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 91/227 (40%), Gaps = 44/227 (19%)

Query: 1   IAGPTILFFQENAGNIAHRLEMVRIMIQRLHCNVFMLSYRGYGASDGYPSQHGIAKDAQA 60
           +A  T+L+   NA +I    E+   +   L  N+    Y GYG S G PS+H    D +A
Sbjct: 66  MATSTLLYSHGNAADIGQMYELFIELSIHLRVNLMGYDYSGYGQSSGKPSEHNTYADIEA 125

Query: 61  ALDYLTQRTDIDSSRIVVFGRSLGGAVGALLTKNNPDKVAGLILENTFTSILDMAGVLLP 120
           A   L +        I+++G+S+G      L    P ++  ++L    + IL    V+ P
Sbjct: 126 AYKCLEESFGAKQEDIILYGQSVGSGPTLDLAARLP-RLRAVVLH---SPILSGLRVMYP 181

Query: 121 FLK--WFIGSNHSKGPKILNFLVRSPWSTVDVIGQVKQPVLFLSGLQDEMVPPSHMQMLY 178
             +  WF                   +  +D I  V+ PVL + G  DE+V  SH + L+
Sbjct: 182 VKRTYWF-----------------DIYKNIDKIPLVQCPVLVIHGTADEVVDCSHGKQLW 224

Query: 179 AKAAAHNKECIFVEFPTGMHMDTWLAGGD--------QYWKTIQDFL 217
                        E     +   WL GG+        +Y K ++ F+
Sbjct: 225 -------------ELCKEKYEPLWLKGGNHCDLELYPEYIKHLKKFI 258


>GSVIVT01036519001 assembled CDS
          Length = 352

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 27/178 (15%)

Query: 5   TILFFQENAGNIAHRLEMVRIMIQRLHCNVFMLSYRGYGASDGYPSQHGIAKDAQAALDY 64
           T+L+   NA ++    E++  +   L  N+    Y GYG S G PS+H    D +AA   
Sbjct: 70  TLLYSHGNAADLGQMYELLSELSVHLPVNLLTYDYSGYGKSTGKPSEHNTYADVEAAYRC 129

Query: 65  LTQRTDIDSSRIVVFGRSLGGAVGALLTKNNPDKVAGLILENTFTSILDMAGVLLPFLKW 124
           L +   +    ++++G+SLG                           +D+A  L      
Sbjct: 130 LEEIYGVKEEDVILYGQSLGSG-----------------------PTIDLAVRLSRLRAV 166

Query: 125 FIGSNHSKGPKILNFLVRSPW----STVDVIGQVKQPVLFLSGLQDEMVPPSHMQMLY 178
            + S    G ++L  + R+ W      +D I  VK PVL + G  D++V  SH + L+
Sbjct: 167 VLHSAILSGLRVLYPVKRTYWFDIFKNIDKIPLVKCPVLVIHGTADDVVDFSHGKQLW 224


>GSVIVT01030994001 assembled CDS
          Length = 258

 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 36/180 (20%)

Query: 29  RLHCNVFMLSYRGYGASDGYPSQHGIAKDAQAALDYLTQRTDIDSSRIVVFGRSLGGAVG 88
           RL  N+    Y GYG S G PS+     D  A    L ++  +   +++++G+S+G    
Sbjct: 11  RLRINLMGYDYSGYGQSTGKPSECNTYADIDAVYKCLKEQYGVKDEQLILYGQSVGSGPT 70

Query: 89  ALLTKNNPDKVAGLILENTFTSILDMAGVLLPFLK--WFIGSNHSKGPKILNFLVRSPWS 146
             L  +    + G++L    + IL    VL P  +  WF                   + 
Sbjct: 71  IDLA-SRVSNLRGVVLH---SPILSGLRVLYPVKRTYWF-----------------DIYK 109

Query: 147 TVDVIGQVKQPVLFLSGLQDEMVPPSHMQMLYAKAAAHNKECIFVEFPTGMHMDTWLAGG 206
            +D IG V+ PVL + G  DE+V  SH + L+             E     +   WL+GG
Sbjct: 110 NIDKIGMVRCPVLVIHGTADEVVDCSHGKQLW-------------ELCQEKYEPLWLSGG 156


>GSVIVT01003990001 assembled CDS
          Length = 368

 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 42/228 (18%)

Query: 1   IAGPTILFFQENAGNIAHRLEMVRIMIQRLHCNVFMLSYRGYGASDGYPSQHGIAKDAQA 60
           +A  T+L+   NA ++    E+   +   L  N+    Y GYG S G PS+     D +A
Sbjct: 66  MATSTLLYSHGNAADLGQMYELFIELSIHLRVNLMGYDYSGYGQSSGKPSEQNTYADIEA 125

Query: 61  ALDYLTQRTDIDSSRIVVFGRSLGGAVGALLTKNNPDKVAGLILENTFTSILDMAGVLLP 120
               L +        I+++G+S+G      L    P ++  ++L    + IL    V+ P
Sbjct: 126 VYKCLEESYGAKQEDIILYGQSVGSGPTLDLAARLP-QLRAVVL---HSPILSGLRVMYP 181

Query: 121 FLK--WFIGSNHSKGPKILNFLVRSPWSTVDVIGQVKQPVLFLSGLQDEMVPPSHMQMLY 178
             +  WF                   +  +D I  V  PVL + G  DE+V  SH + L+
Sbjct: 182 VKRTYWF-----------------DIYKNIDKIPLVNCPVLIIHGTSDEVVDCSHGKQLW 224

Query: 179 AKAAAHNKECIFVEFPTGMHMDTWLAGGDQ-----YWKTIQDFLKKYV 221
                        E     +   WL GG+      Y + I+  LKK+V
Sbjct: 225 -------------ELCKEKYEPLWLKGGNHCDLELYPEYIR-HLKKFV 258


>GSVIVT01001076001 assembled CDS
          Length = 240

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 23/159 (14%)

Query: 5   TILFFQENAGNIAHRLEMVRIMIQRLHCNVFMLSYRGYGASDGYPSQHGIAKDAQAALDY 64
           TIL+   NA ++    E+   +   L  N+    Y GYGAS G PS+     D +A  + 
Sbjct: 69  TILYSHGNAADLGQMQELFIELRAHLRVNIMSYDYSGYGASTGKPSEFNTYYDIEAVYNC 128

Query: 65  LTQRTDIDSSRIVVFGRSLGGAVGALLTKNNPDKVAGLILENTFTSILDMAGVLLP--FL 122
           L +   +    ++++G+S+G      L   +P K+ G++L    ++IL    VL P    
Sbjct: 129 LKREYGLKQEDVILYGQSVGSGPTLHLASRSP-KLRGVVLH---SAILSGIRVLYPVKMT 184

Query: 123 KWFIGSNHSKGPKILNFLVRSPWSTVDVIGQVKQPVLFL 161
            WF                   +  +D I QV  PVL +
Sbjct: 185 FWF-----------------DIFKNIDKIRQVNCPVLVI 206


>GSVIVT01003720001 assembled CDS
          Length = 240

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 23/159 (14%)

Query: 5   TILFFQENAGNIAHRLEMVRIMIQRLHCNVFMLSYRGYGASDGYPSQHGIAKDAQAALDY 64
           TIL+   NA ++    E+   +   L  N+    Y GYGAS G PS+     D +A  + 
Sbjct: 69  TILYSHGNAADLGQMQELFIELRAHLRVNIMSYDYSGYGASTGKPSEFNTYYDIEAVYNC 128

Query: 65  LTQRTDIDSSRIVVFGRSLGGAVGALLTKNNPDKVAGLILENTFTSILDMAGVLLP--FL 122
           L +   +    ++++G+S+G      L   +P K+ G++L    ++IL    VL P    
Sbjct: 129 LKREYGLKQEDVILYGQSVGSGPTLHLASRSP-KLRGVVLH---SAILSGIRVLYPVKMT 184

Query: 123 KWFIGSNHSKGPKILNFLVRSPWSTVDVIGQVKQPVLFL 161
            WF                   +  +D I QV  PVL +
Sbjct: 185 FWF-----------------DIFKNIDKIRQVNCPVLVI 206


>GSVIVT01010118001 assembled CDS
          Length = 380

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 31/183 (16%)

Query: 2   AGPTILFFQENAGNIAHRLEMVRIMIQRLHCNVFMLSYRGYGASDGYPSQHGIAKDAQAA 61
           A  T+L+   NA ++     +   +  RL  N+    Y GYG S G PS+     D +AA
Sbjct: 67  ASVTVLYSHGNAADLGQMFNIFAELSLRLGVNLMGYDYSGYGQSSGKPSEQDTYADIEAA 126

Query: 62  LDYLTQRTDIDSSRIVVFGRSLGGAVGALLTKNNPDKVAGLILENTFTSILDMAGVLL-- 119
              L     +    I+++G+S+G               +G  LE   T    +  V+L  
Sbjct: 127 YSCLEDTYGVKEEDIILYGQSVG---------------SGPTLE-LATCFARLRAVILHS 170

Query: 120 PFLKWFIGSNHSKGPKILNFLVRSPW----STVDVIGQVKQPVLFLSGLQDEMVPPSHMQ 175
           P L          G +++  + R+ W      +D I  V  PVL + G  DE+V  SH +
Sbjct: 171 PIL---------SGLRVMYPVKRTFWFDIYKNIDKIPLVNCPVLVIHGTDDEIVDWSHGK 221

Query: 176 MLY 178
            L+
Sbjct: 222 QLW 224


>GSVIVT01013058001 assembled CDS
          Length = 315

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 19/165 (11%)

Query: 5   TILFFQENAGNIAHRLEMVRIMIQRLHCNVFMLSYRGYGASDGYPSQHGIAKDAQAALDY 64
           T+L+   NA ++    ++   +   L  N+    Y GYGAS G PS+     D +A  + 
Sbjct: 75  TLLYSHGNAADLGQLYDLFVQLKVNLRVNLMGYDYSGYGASTGKPSESNTYADIEAVYEC 134

Query: 65  LTQRTDIDSSRIVVFGRSLGGAVGALLTKNNPDKVAGLILENTFTSILDMAGVLLPFLKW 124
           L     +    ++++G+S+G      L    P ++ G++L +   S L +    L  +K+
Sbjct: 135 LETEYGVSQEDLILYGQSVGSGPTLHLAAQLP-RLRGVVLHSAILSGLRV----LCHVKF 189

Query: 125 FIGSNHSKGPKILNFLVRSPWSTVDVIGQVKQPVLFLSGLQDEMV 169
                       L F +   +  V+ I +VK PVL + G +D++V
Sbjct: 190 -----------TLCFDI---YKNVNKIRKVKCPVLVIHGTEDDVV 220