Jatropha Genome Database

JcCB0041791.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041791.20 - phase: 0 
         (191 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036060001 assembled CDS                                       184   3e-47
GSVIVT01024006001 assembled CDS                                        53   9e-08

>GSVIVT01036060001 assembled CDS
          Length = 196

 Score =  184 bits (466), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/195 (58%), Positives = 135/195 (69%), Gaps = 5/195 (2%)

Query: 1   MATTVHFSPFFCAAFSSN-KNLNKCCFGSVEARKSSFRSFKARAIKEKTEERKNPQXXXX 59
           MA  +  + F  A+ S N +        S    K +F  F+ RAIKEKTEE + P     
Sbjct: 1   MAGALLGTCFSSASLSINTREFRIGSSASTPPSKPNFTCFRVRAIKEKTEEIRTPSPSPS 60

Query: 60  XX--AEEIAKKYGLEAGLWKIFSTKEEQ--DGEEKKSKGEQAKELLAKYGGAYXXXXXXX 115
               A+EI +K+GLEAGLWKIFS+K+E+   G+ +KSKGE+AKELLAKYGGAY       
Sbjct: 61  SSPSAQEITEKFGLEAGLWKIFSSKDEEKEGGKREKSKGEEAKELLAKYGGAYLATSITL 120

Query: 116 XXXXXXXCYALISAGIDVQALLQKVGISTDEAGEKVGTFALAYAAHKAASPIRFPPTVAL 175
                  CYALI+AG+DVQALLQKVGIS D  GEKVGTFALAYAAHKAASPIRFPPTVAL
Sbjct: 121 SLISFSLCYALINAGVDVQALLQKVGISVDATGEKVGTFALAYAAHKAASPIRFPPTVAL 180

Query: 176 TPVVASWIGKKVDQD 190
           TP+VASWIGK VD++
Sbjct: 181 TPIVASWIGKIVDKE 195


>GSVIVT01024006001 assembled CDS
          Length = 181

 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 28/123 (22%)

Query: 92  SKGEQAKELLAKYGGAYXXXXXXXXXXXXXXCYALISAGIDVQALLQKVGIS----TDEA 147
           S G + +ELL KYG                  Y  I   +DV++LL KVG+S     DE 
Sbjct: 4   SNGGRFRELLKKYGKVALGVHFSVSAASITGLYIAIKNNVDVESLLHKVGMSGVSTKDEQ 63

Query: 148 GEKV------------------------GTFALAYAAHKAASPIRFPPTVALTPVVASWI 183
            +++                        G  ALA   +KA  PIR P T+ALTP VA ++
Sbjct: 64  QQQLHPPPTETLDEFKRNRTAELAATSGGALALAVLCNKALFPIRVPITIALTPPVARFL 123

Query: 184 GKK 186
            ++
Sbjct: 124 ARR 126