Jatropha Genome Database

JcCB0041791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041791.10 + phase: 0 /pseudo/partial
         (296 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036059001 assembled CDS                                       380   e-106
GSVIVT01033931001 assembled CDS                                       308   2e-84
GSVIVT01009890001 assembled CDS                                       139   2e-33

>GSVIVT01036059001 assembled CDS
          Length = 446

 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/226 (81%), Positives = 198/226 (87%), Gaps = 3/226 (1%)

Query: 68  TQIRXTNKMQERLRDLSEDENNQKWLFVTEEDIKSLPSLQNETLIAIKAPHGTTLEVPDP 127
            QIR    MQERLRDLSEDENNQKWLFVTEEDIK LP  Q ETLIAIKAPHGTTLEVPDP
Sbjct: 221 AQIR---DMQERLRDLSEDENNQKWLFVTEEDIKGLPCFQKETLIAIKAPHGTTLEVPDP 277

Query: 128 DEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIQGVEPPPNYPSSSGFNENMDTTM 187
           DEAVDYPQRRYRIVLRS+MGPIDVYLVSQFEEKFEEI G+E PP++PSSSG+NE+    M
Sbjct: 278 DEAVDYPQRRYRIVLRSSMGPIDVYLVSQFEEKFEEINGLEAPPSFPSSSGYNEDPTAAM 337

Query: 188 IPGESRGKEIEMQGQDSNRMCSDLTTSQDFVSGLMKIVPSEVDSDADYWLLSDADVSITD 247
           +  ESRGKEIE+QGQD++RM SDL  SQDFVSG+MKIVPS+VDSDADYWLLSDADVSITD
Sbjct: 338 VTEESRGKEIEIQGQDAHRMSSDLNASQDFVSGIMKIVPSDVDSDADYWLLSDADVSITD 397

Query: 248 MWRTEPGVEWNEFGTLQDDYGMANVSTPQPQTPPLNPAEVPPNANT 293
           MWRTEPGVEWNE   L DDY MANVSTPQPQTPP + AEVPP ANT
Sbjct: 398 MWRTEPGVEWNELDALNDDYAMANVSTPQPQTPPSSAAEVPPAANT 443


>GSVIVT01033931001 assembled CDS
          Length = 466

 Score =  308 bits (788), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 157/219 (71%), Positives = 178/219 (81%), Gaps = 5/219 (2%)

Query: 75  KMQERLRDLSEDENNQKWLFVTEEDIKSLPSLQNETLIAIKAPHGTTLEVPDPDEAVDYP 134
           +MQE+LRDLSEDENNQKWLFVTE+DIK LP  QNETLIAIKAPHGTTLEVPDPDEAVDYP
Sbjct: 245 EMQEKLRDLSEDENNQKWLFVTEDDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYP 304

Query: 135 QRRYRIVLRSTMGPIDVYLVSQFEEKFEEIQGVEPPPNYP--SSSGFNENMDTTMIPGES 192
           QRRYRIVLRSTMGPIDVYLVSQFEEKFEE+ G  PP ++P  SSSG NEN  T ++  +S
Sbjct: 305 QRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNGTPPPLSFPLASSSGSNENPSTEVVIADS 364

Query: 193 RGKEIEMQGQDSNRMCSDLTTSQDFVSGLMKIVPSEVDSDADYWLLSDADVSITDMWRTE 252
            GKE+E   QD  +MCSDLT SQ+F+ G+MKIVP +VDSDADYWL SDA+VSITDMW+T+
Sbjct: 365 SGKELEP--QDGYQMCSDLTASQEFIGGIMKIVP-DVDSDADYWLRSDAEVSITDMWKTD 421

Query: 253 PGVEWNEFGTLQDDYGMANVSTPQPQTPPLNPAEVPPNA 291
             VEWN    L  ++GMA+VSTP PQTPP    E P  A
Sbjct: 422 SYVEWNGVDMLNAEFGMADVSTPLPQTPPSGLTEGPSTA 460


>GSVIVT01009890001 assembled CDS
          Length = 436

 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/220 (40%), Positives = 119/220 (54%), Gaps = 37/220 (16%)

Query: 77  QERLRDLSEDENNQKWLFVTEEDIKSLPSLQNETLIAIKAPHGTTLEVPDPDEAVDYPQR 136
           QE LR ++ DEN QK LF+TEEDI +LP  QN+TLIAIKAP  +++EVPDPDE + + QR
Sbjct: 251 QELLRAIAGDENCQKHLFLTEEDITTLPCFQNQTLIAIKAPQASSVEVPDPDEDIGFSQR 310

Query: 137 RYRIVLRSTMGPIDVYLVSQFEEKFEEIQGVEPPPNYPSSSGFNENMDTTMIPGESRGKE 196
           ++RI++RST GPID+YL+      +     VE        SG N+  D    P  S G E
Sbjct: 311 QFRIIIRSTTGPIDLYLLRTKSLDY----SVE-------DSGCNKLQDAG--PFSSLGSE 357

Query: 197 IEMQGQDSNRMCSDLTTSQDFVSGLMKIVPSEVDSDADYWLLSDADVSITDMWRTEPGVE 256
                                 SG+ KI+PS+   D DYWL SD +VSITD+W  E   +
Sbjct: 358 ---------------------GSGIQKIIPSDFKIDDDYWLRSDPEVSITDLWANEDWAQ 396

Query: 257 WNEFGTLQDDYGMANVSTPQPQTPPLNPAEVPPNANTTAG 296
            N+    Q+D   ++ S  Q Q P L  +   P+ N   G
Sbjct: 397 ENDI--FQEDSITSDASLAQTQ-PSLRGSLSEPDKNQAVG 433