Jatropha Genome Database

JcCB0041771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041771.10 + phase: 0 
         (168 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016368001 assembled CDS                                       274   2e-74
GSVIVT01003183001 assembled CDS                                       128   1e-30
GSVIVT01009126001 assembled CDS                                        81   3e-16

>GSVIVT01016368001 assembled CDS
          Length = 598

 Score =  274 bits (700), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/150 (86%), Positives = 138/150 (92%)

Query: 18  GMPDVVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITIALCYTTSPDRLRRRFKH 77
           GM D VL CVMPYI DP+DRDAVSLVCRRWYELDALTRKHITIALCYTT+P RLR RF H
Sbjct: 20  GMSDEVLNCVMPYIHDPKDRDAVSLVCRRWYELDALTRKHITIALCYTTTPGRLRGRFPH 79

Query: 78  LESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVHFRRMIVKDSDLELLAK 137
           LESLKLKGKPRAAMFNLI EDWGG+VTPWV EI+D FDCLKS+HFRRMIVKDSDL+LLA+
Sbjct: 80  LESLKLKGKPRAAMFNLIMEDWGGYVTPWVKEISDYFDCLKSLHFRRMIVKDSDLQLLAQ 139

Query: 138 SRGRVLQVLKLDKCSGFSTDGLLHVGRLCR 167
           +RGRVL VLKLDKCSGFSTDGLLHVGR CR
Sbjct: 140 ARGRVLLVLKLDKCSGFSTDGLLHVGRSCR 169


>GSVIVT01003183001 assembled CDS
          Length = 553

 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 11  NRMSCSSGMPDVVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITIALCYTTSPDR 70
           N ++ SS  PD VLE V+  +   +DR +VSLVC+ WY  +  +R H+ I  CY+ SP+ 
Sbjct: 16  NELTRSSPFPDEVLERVLGLVKSHKDRSSVSLVCKDWYNAERWSRTHVFIGNCYSVSPEI 75

Query: 71  LRRRFKHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVHFRRMIVKDS 130
           + RRF ++ S+ LKGKPR + FNL+P +WG  +  W+   A  +  L+ +  +RM V D 
Sbjct: 76  VARRFPNIRSVTLKGKPRFSDFNLVPLNWGADIHAWLVVFASKYPLLEELRLKRMTVTDE 135

Query: 131 DLELLAKSRGRVLQVLKLDKCSGFSTDGLLHVGRLCR 167
            LE LA +     + L L  C GFSTDGL  +   C+
Sbjct: 136 SLEFLATTFTN-FKALSLLSCDGFSTDGLAAIATHCK 171


>GSVIVT01009126001 assembled CDS
          Length = 552

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 1/83 (1%)

Query: 85  GKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVHFRRMIVKDSDLELLAKSRGRVLQ 144
           GKPR A FNL+P +WG + TPWV  +A S+  L+ V+ +RM V D DLELLA+S     +
Sbjct: 53  GKPRFADFNLMPPNWGAYFTPWVTAMATSYPWLEKVYLKRMFVTDRDLELLAQSFP-AFK 111

Query: 145 VLKLDKCSGFSTDGLLHVGRLCR 167
            L L  C GF T GL  +   CR
Sbjct: 112 ELVLVCCDGFGTSGLAGIASKCR 134