Jatropha Genome Database

JcCB0041541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041541.20 - phase: 2 /pseudo/partial
         (160 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022229001 assembled CDS                                       198   8e-52
GSVIVT01013668001 assembled CDS                                       170   2e-43
GSVIVT01033029001 assembled CDS                                        86   8e-18
GSVIVT01024319001 assembled CDS                                        84   4e-17

>GSVIVT01022229001 assembled CDS
          Length = 301

 Score =  198 bits (504), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 94/135 (69%), Positives = 116/135 (85%)

Query: 19  QTEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVGTESRP 78
           ++E L+KLS+ HH+VVSTGGGAV+RPINW++M KGISVWLDVPLEALA+RI+AVGT SRP
Sbjct: 162 ESETLQKLSLTHHMVVSTGGGAVIRPINWKYMAKGISVWLDVPLEALARRISAVGTNSRP 221

Query: 79  LLNHESGDAYTKAFRRLSALLEERGEFYANANTRVSLENIAAKLGYRDVSSISPTAIAIE 138
           LL+H+SGDAY +   RLS L +ERG+ YANAN RVSLE IAAKLG+RDV++++PT IAIE
Sbjct: 222 LLHHDSGDAYNRTLTRLSNLWKERGDAYANANARVSLEEIAAKLGHRDVTNLTPTVIAIE 281

Query: 139 ALEQIGNFLEEEEGI 153
           AL QI  FL+ E G+
Sbjct: 282 ALLQIEAFLKGENGM 296


>GSVIVT01013668001 assembled CDS
          Length = 292

 Score =  170 bits (431), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 111/140 (79%)

Query: 18  FQTEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVGTESR 77
           +++E L+KL+ +   VV+TGGGAVVRPINW++M++G+SV+LDVPL+ LA+RIA VGT+SR
Sbjct: 153 YESEALRKLASIPKQVVATGGGAVVRPINWKYMKQGVSVFLDVPLDTLARRIADVGTDSR 212

Query: 78  PLLNHESGDAYTKAFRRLSALLEERGEFYANANTRVSLENIAAKLGYRDVSSISPTAIAI 137
           PLL+ ESGDAYTKAF  L  L ++R E YANA+  VSL++IAA+LG  D+S I+P AIA+
Sbjct: 213 PLLHFESGDAYTKAFVGLFTLSKKRTEAYANADATVSLQHIAARLGLEDISDITPAAIAM 272

Query: 138 EALEQIGNFLEEEEGIAYNP 157
           E L QI N+L+ + GI   P
Sbjct: 273 EVLVQIENYLQGKNGIGMFP 292


>GSVIVT01033029001 assembled CDS
          Length = 305

 Score = 85.9 bits (211), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 79/130 (60%), Gaps = 6/130 (4%)

Query: 19  QTEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVGTESRP 78
           +TEVLK+LS M  +VV  G G V    N   +R GIS+W+DVP+E +A+ +   G +  P
Sbjct: 160 ETEVLKQLSSMGRLVVCAGDGLVQSSTNLALLRHGISIWIDVPIEMVAKNMIEEGVQI-P 218

Query: 79  LLNHESGDAYT-----KAFRRLSALLEERGEFYANANTRVSLENIAAKLGYRDVSSISPT 133
           +    + ++Y+     + F +L+ + EE    YA A+  VSL+ +A++LGY D+ +++  
Sbjct: 219 VTELSTAESYSETGDNQVFAQLAVVYEEMKGGYATADASVSLQKVASQLGYDDLDAVTTE 278

Query: 134 AIAIEALEQI 143
            +A+E L++I
Sbjct: 279 DMAMEVLKEI 288


>GSVIVT01024319001 assembled CDS
          Length = 299

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 76/125 (60%), Gaps = 1/125 (0%)

Query: 19  QTEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVGTESRP 78
           +TEVLK+LS    + V  G G+V   IN   +R GIS+W+DVP+E +A+ +   G +  P
Sbjct: 128 ETEVLKQLSSRGQLAVCAGNGSVHSSINLALLRHGISIWIDVPIEMVAKNVIEEGVQI-P 186

Query: 79  LLNHESGDAYTKAFRRLSALLEERGEFYANANTRVSLENIAAKLGYRDVSSISPTAIAIE 138
           +    + ++Y++   +L  + EER   YA A+  VSL+ +A++L Y D+ +++   + +E
Sbjct: 187 VTELSTAESYSETGAQLVMVYEERKGGYATADASVSLQKVASQLSYDDLDAVTTEDMTME 246

Query: 139 ALEQI 143
            L++I
Sbjct: 247 VLKEI 251