Jatropha Genome Database

JcCB0041541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041541.10 + phase: 0 /pseudo/partial
         (106 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022227001 assembled CDS                                        92   3e-20

>GSVIVT01022227001 assembled CDS
          Length = 344

 Score = 92.4 bits (228), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 61/85 (71%), Gaps = 4/85 (4%)

Query: 20  FLGEIRGFDMKKGFWKELRGVEKELPRFLAGATMANVGGMLMVVWEKTXXXXXXXKEMEI 79
           +LG+IRGFD+K+G WKEL+G+EK LP+FL GATMANVGG L+V+WE         KEMEI
Sbjct: 247 YLGKIRGFDVKEGLWKELKGLEKGLPKFLCGATMANVGGNLVVLWEGK----GNGKEMEI 302

Query: 80  WCAEIEVEKNVKEELWGKVKWCDVV 104
            CAEI ++K     L G + W DV+
Sbjct: 303 SCAEIAIQKCSDGGLRGSIVWSDVI 327