Jatropha Genome Database

JcCB0041131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041131.10 + phase: 0 /pseudo
         (234 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021078001 assembled CDS                                       134   5e-32
GSVIVT01028640001 assembled CDS                                       130   5e-31

>GSVIVT01021078001 assembled CDS
          Length = 203

 Score =  134 bits (336), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/240 (40%), Positives = 112/240 (46%), Gaps = 61/240 (25%)

Query: 1   MRKAKTTGEVAVMDLS---LGVRTRAKTLALQRQARLXXXXXXXXXXXXXXXXXXXXXYL 57
           MRKAK  GEVAVM++S   LGVRTRAKTLAL+R  +                      YL
Sbjct: 1   MRKAKARGEVAVMEVSQPCLGVRTRAKTLALERLQK--SRPRPSPPQSPPQQQASSSSYL 58

Query: 58  QLRSRRLVKPPTL---VNDSKRQKQSQNKEAQNPNPNXXXXXXXXXXXXXXXXQKNEVSG 114
           QLRSRRL+KPP L   V+  K  K+ Q  E  N N                         
Sbjct: 59  QLRSRRLLKPPILSPAVDLLKLGKEEQILEDNNAN------------------------- 93

Query: 115 ENKEEVQXXXXXXXXXXXXXXXXXXXXLGIEASFGENVLDIEGRERSTRESTPCSLIRDP 174
                                      LGIEASFGENVLD E R+RSTRE+TPCSLIRDP
Sbjct: 94  --------------------------DLGIEASFGENVLDFEARDRSTRETTPCSLIRDP 127

Query: 175 EXXXXXXXXXXXXXXXXXXXXIQNSAHRHIPTSLEMDEFFARAEEEQQRQFIEKXIYSFN 234
           E                    + NS   H+PT+ EMD+FF  AEEEQQR F +K  Y+F+
Sbjct: 128 ETIRTPGSTTKPASSSGINRRMDNSRQGHVPTTQEMDQFFQSAEEEQQRVFTDK--YNFD 185


>GSVIVT01028640001 assembled CDS
          Length = 218

 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/236 (36%), Positives = 116/236 (49%), Gaps = 42/236 (17%)

Query: 1   MRKAKTTGEVAVMDLS--LGVRTRAKTLALQRQARLXXXXXXXXXXXXXXXXXXXXXYLQ 58
           M+KAK TG+V VM++S  LGVRTRAKTLALQR  +                      YL+
Sbjct: 5   MKKAKITGDVTVMEVSSSLGVRTRAKTLALQRLQK----------TTHQEGPKPDTSYLE 54

Query: 59  LRSRRLVKPPTLVNDSKRQKQSQNKEAQNPNPNXXXXXXXXXXXXXXXXQKNEVSGENKE 118
           LRSRRL KPP L   +K+Q         NPNP                  + E+   N  
Sbjct: 55  LRSRRLEKPPLLSEPNKKQ---------NPNPKAS--------------SRVELGSVNSN 91

Query: 119 EVQXXXXXXXXXXXXXXXXXXXXLGIEASFGENVLDIEGRERSTRESTPCSLIRDPEXXX 178
            V                     +G+EAS+GENVL+ EGR+RSTRESTPCSLIRDP+   
Sbjct: 92  SVGSVPPGEKINAVETED-----VGVEASYGENVLEFEGRDRSTRESTPCSLIRDPDTIA 146

Query: 179 XXXXXXXXXXXXXXXXXIQNSAHRHIPTSLEMDEFFARAEEEQQRQFIEKXIYSFN 234
                            ++++    IPT+ E++EFF  AEE  Q++F++K  Y+F+
Sbjct: 147 TPGSTTRPSSSSVTTRRVRSNVLGDIPTAAELEEFFTHAEEHAQKEFMDK--YNFD 200