Jatropha Genome Database

JcCB0040601.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0040601.20 - phase: 0 
         (270 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010168001 assembled CDS                                       126   1e-29
GSVIVT01017445001 assembled CDS                                        65   4e-11

>GSVIVT01010168001 assembled CDS
          Length = 626

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 75/103 (72%), Gaps = 2/103 (1%)

Query: 1   MEDVLTEIPPPSRFFQEDLXXXXXXXXXXXXXXXXXXXXKPDQPLCPSLLIIALSTPSLY 60
           MEDVLTEIPPPSRFF+EDL                      D+PL  SLLIIA+S+PSL 
Sbjct: 128 MEDVLTEIPPPSRFFKEDLNNFTPPSPPLPSPFLLFSSL--DKPLRSSLLIIAISSPSLS 185

Query: 61  VFHHVSSKTLIGSVFIPEIPFSGNSIDPSLRDKSCNIYALNDA 103
           VFHHV++KTLIG++ +PEIP SGNSI+PS+RDKSCNIYALND 
Sbjct: 186 VFHHVATKTLIGTLILPEIPLSGNSIEPSVRDKSCNIYALNDG 228



 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 77/137 (56%), Gaps = 24/137 (17%)

Query: 108 LLVSIQCSVSAERSNVVAKLLIGEQIIPERVLILDSIKIQNFRGKLSSDEACAFKLETST 167
           L+++I     +   +V  K LIG  I+PE  L  +SI                   E S 
Sbjct: 175 LIIAISSPSLSVFHHVATKTLIGTLILPEIPLSGNSI-------------------EPSV 215

Query: 168 ERKGHTNGCGGSSLLKGLDYLPSGSMVDGLAAALLARCQMRNMKGTLCVSWPEHDGSAVA 227
             K     C   +L  GLDY PSGSMVDGLAAALL++CQMRN+KGTLCVSWPE  GS V+
Sbjct: 216 RDKS----CNIYALNDGLDYFPSGSMVDGLAAALLSQCQMRNIKGTLCVSWPEFGGSGVS 271

Query: 228 LIKSVLQKNVLHRINLS 244
           L+KS++ K VL  +  S
Sbjct: 272 LVKSII-KEVLPSLEFS 287


>GSVIVT01017445001 assembled CDS
          Length = 338

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 207 MRNMKGTLCVSWPEHDGSAVALIKSVLQKNVLHRINLSSNGNAEDKYLWSSRIKDSSFDS 266
           MRN+KGTLCVSWPE  G  V+L+KS++ K VL  + +S   + ED+Y     IKD  FDS
Sbjct: 1   MRNIKGTLCVSWPEFGGFGVSLVKSII-KEVLPSLEISLTSDEEDEYSKLDHIKDHPFDS 59

Query: 267 EL 268
           EL
Sbjct: 60  EL 61