Jatropha Genome Database

JcCB0039521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0039521.10 + phase: 0 
         (307 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011187001 assembled CDS                                       471   e-133
GSVIVT01033422001 assembled CDS                                        54   9e-08
GSVIVT01029247001 assembled CDS                                        50   2e-06

>GSVIVT01011187001 assembled CDS
          Length = 370

 Score =  471 bits (1212), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/293 (79%), Positives = 241/293 (82%)

Query: 15  NTWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNLEDVAKSIVCMLMSGPFLTGYTQTL 74
           N WKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNLEDVAKSIVCM+MSGP LTGYTQTL
Sbjct: 78  NKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTL 137

Query: 75  NDYYDREIDAINEPYRPIPSGAISENEVITQIWVXXXXXXXXXXXXDVWAGHNSPTVFYL 134
           ND+YDREIDAINEPYRPIPSGAISENEVITQIW+            DVWAGH+ P VFYL
Sbjct: 138 NDWYDREIDAINEPYRPIPSGAISENEVITQIWLLLLGGLGLAGLLDVWAGHDFPIVFYL 197

Query: 135 ALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYS 194
           ALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTL PDIIVLTLLYS
Sbjct: 198 ALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLNPDIIVLTLLYS 257

Query: 195 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGAETAKWICVGAIDITQISIXXXXXXXXXX 254
           IAGLGIAIVNDFKS+EGDRALGLQSLPVAFGAETAKWICVGAIDITQ+S+          
Sbjct: 258 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETAKWICVGAIDITQLSVAGYLLGAGKP 317

Query: 255 XXXXXXXXXXXPQVFFQFQYFLKDPAKYDVKYQASAQPFXXXXXXXXXXXXSH 307
                      PQV FQFQYFLKDP KYDVKYQASAQPF            SH
Sbjct: 318 YYALALVGLIIPQVIFQFQYFLKDPVKYDVKYQASAQPFLVLGLLVTALATSH 370


>GSVIVT01033422001 assembled CDS
          Length = 390

 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 32/210 (15%)

Query: 48  WNLEDVAKSIVCMLMSGPFLTGYTQTLNDYYDREIDAINEPYRPIPSGAISENEVITQIW 107
           W+L   A S +  L+ G    GY   +N  YD  ID +N+PY PI +G +S    +   W
Sbjct: 131 WSLLFKAFSGLLALICG---NGYIVGINQIYDISIDKVNKPYLPIAAGDLS----VQSAW 183

Query: 108 VXXXXXXXXXXXXDVWAGHNSPTVFYLALGGSLLSYIYSAPPLKLKQ------------N 155
                         +   +    +  L   G +L  IYS PP ++K+             
Sbjct: 184 FLVLFFAVAGVL--IVGSNFGSFITSLYCLGLVLGTIYSVPPFRMKRFPVAAFLIIATVR 241

Query: 156 GWIGNFALGASYISLPWWAGQALFG---TLTPDIIVLTLLYSIAGLGIAIVNDFKSIEGD 212
           G++ NF +        ++A +A  G     +  ++ +T   ++  L IAI  D   +EGD
Sbjct: 242 GFLLNFGV--------YYATRAALGLPFMWSAPVVFITTFVTLFALVIAITKDLPDVEGD 293

Query: 213 RALGLQSLPVAFGAETAKWICVGAIDITQI 242
           R   + +L    G     ++  G + +  I
Sbjct: 294 RKYQISTLATKLGVRNIAFLGSGLLLVNYI 323


>GSVIVT01029247001 assembled CDS
          Length = 406

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 18/191 (9%)

Query: 53  VAKSIVCMLMSGPFLTGYTQTLNDYYDREIDAINEPYRPIPSGAISENEVITQIWVXXXX 112
           V +++V  L+   ++ G    LN   D EID +N+PY P+ SG   E  V T + +    
Sbjct: 151 VLEAVVAALLMNIYIVG----LNQISDIEIDKVNKPYLPLASG---EYSVGTGVGIVTSF 203

Query: 113 XXXXXXXXDVWAGHNSPTVFYLALGGSL-LSYIYSAPPLKLKQNGWIGN---FALGASYI 168
                     W   + P  + L +   L  +Y    P L+ K+   +      A+ A  +
Sbjct: 204 AFMSFLVG--WIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIV 261

Query: 169 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLG-----IAIVNDFKSIEGDRALGLQSLPVA 223
            + ++     F    P +    L+++ A +      IA+  D   IEGDR  G++S  V 
Sbjct: 262 QIAFYMHVQTFVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDRIFGIRSFSVR 321

Query: 224 FGAETAKWICV 234
            G +   WIC+
Sbjct: 322 LGQKRVFWICI 332