Jatropha Genome Database

JcCB0037821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0037821.10 + phase: 0 /partial
         (249 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000780001 assembled CDS                                       441   e-124
GSVIVT01004085001 assembled CDS                                       392   e-110
GSVIVT01018382001 assembled CDS                                        60   1e-09
GSVIVT01013241001 assembled CDS                                        55   2e-08

>GSVIVT01000780001 assembled CDS
          Length = 318

 Score =  441 bits (1135), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/232 (90%), Positives = 220/232 (94%)

Query: 18  LFYCVECEDLARKVAAHSELITLRSINWRNFDDGFPNLYINDAHDIRGQHVAFLAAFSSP 77
           LFYC+E EDLARKVA  S LI L+SINWR+FDDGFPNL+IN+A  IRGQHVAFLA+FSSP
Sbjct: 11  LFYCMESEDLARKVAEQSPLIQLQSINWRSFDDGFPNLFINNAQYIRGQHVAFLASFSSP 70

Query: 78  GVIFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPISRG 137
            VIFEQLSVI+ALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPISRG
Sbjct: 71  AVIFEQLSVIFALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPISRG 130

Query: 138 GPTSLVIYDIHALQERFYFGDHVLPLFETGIPLLKQRLHQLPDSDKIVVAFPDDGAWKRF 197
           GPTSLVIYDIHALQERFYF DHVLPLFETGIPLLKQRLHQLPD+D +VVAFPDDGAWKRF
Sbjct: 131 GPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDTDNVVVAFPDDGAWKRF 190

Query: 198 HKLLDHFPMVVCTKVREGDKRIVRLKEGNPAGCHVVIVDDLVQSGGTLIECQ 249
           HK LDHFPMVVC KVREGDKRIVRLKEGNPAGCHVVIVDDLVQSGGTLIECQ
Sbjct: 191 HKQLDHFPMVVCAKVREGDKRIVRLKEGNPAGCHVVIVDDLVQSGGTLIECQ 242


>GSVIVT01004085001 assembled CDS
          Length = 393

 Score =  392 bits (1008), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 182/234 (77%), Positives = 209/234 (89%)

Query: 16  VHLFYCVECEDLARKVAAHSELITLRSINWRNFDDGFPNLYINDAHDIRGQHVAFLAAFS 75
           V LFYC E + LA ++AA S+ I LRSI WR F+DGFPNL+I++A  IRGQHVAFLA+FS
Sbjct: 83  VCLFYCAETKALAERIAAESDAIELRSITWRTFEDGFPNLFISNAQGIRGQHVAFLASFS 142

Query: 76  SPGVIFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPIS 135
           SPGVIFEQLSVIYALP+LF++SFTLVLPFFPTG+ ERMEEEGD+ATAFT+ARILSNIPIS
Sbjct: 143 SPGVIFEQLSVIYALPKLFISSFTLVLPFFPTGTSERMEEEGDIATAFTLARILSNIPIS 202

Query: 136 RGGPTSLVIYDIHALQERFYFGDHVLPLFETGIPLLKQRLHQLPDSDKIVVAFPDDGAWK 195
           RGGPTSLV +DIHALQERFYFGD++LP F++GIPLLK RL QLPDSD I +AFPDDGAWK
Sbjct: 203 RGGPTSLVTFDIHALQERFYFGDNILPCFDSGIPLLKARLQQLPDSDNISIAFPDDGAWK 262

Query: 196 RFHKLLDHFPMVVCTKVREGDKRIVRLKEGNPAGCHVVIVDDLVQSGGTLIECQ 249
           RFHK L HFP +VC KVREG++RIVR+KEG+P G HVVIVDDLVQSGGTLI+CQ
Sbjct: 263 RFHKQLQHFPTIVCAKVREGNQRIVRIKEGDPKGRHVVIVDDLVQSGGTLIQCQ 316


>GSVIVT01018382001 assembled CDS
          Length = 403

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 25/230 (10%)

Query: 27  LARKVAAHSELITLRSINWRNFDDGFPNLYINDAHDIRGQHVAFLAAFSSPGV--IFEQL 84
           L++++A +  L  L  IN + F DG   +Y+     +RG  V  +     P    + E L
Sbjct: 98  LSQEIACYMGL-ELGKINIKRFADG--EIYVQLQESVRGCDVYLVQPTCPPANENLMELL 154

Query: 85  SVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPISRGGPTSLVI 144
            +I A  R    + T V+P+F     +R + +G  + A   A++++N+ I+  G   ++ 
Sbjct: 155 IMIDACRRASAKNITAVIPYFGYARADR-KTQGRESIA---AKLVANL-ITEAGANRVLA 209

Query: 145 YDIHALQERFYFG---DHVLPLFETGIPLLKQRL-HQLPDSDKIVVAFPDDGAWKR---F 197
            D+H+ Q   YF    DHV      G P++   L  +   SD ++V  PD G   R   F
Sbjct: 210 CDLHSGQSMGYFDIPVDHVY-----GQPVILDYLASKTICSDDLIVVSPDVGGVARARAF 264

Query: 198 HKLLDHFPMVVCTKVREGDK--RIVRLKEGNPAGCHVVIVDDLVQSGGTL 245
            K L   P+ +  K R G     ++ L  G+  G   V+VDD++ + GT+
Sbjct: 265 AKKLSDAPLAIVDKRRHGHNVAEVMNLI-GDVKGKVAVMVDDMIDTAGTI 313


>GSVIVT01013241001 assembled CDS
          Length = 397

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 16/215 (7%)

Query: 40  LRSINWRNFDDGFPNLYINDAHDIRGQHVAFLAAFSSPGV--IFEQLSVIYALPRLFVAS 97
           L  IN + F DG   +Y+     +RG  V  +     P    + E L +I A  R    +
Sbjct: 110 LGKINIKRFADG--EIYVQLEESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKT 167

Query: 98  FTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPISRGGPTSLVIYDIHALQERFYFG 157
            T V+P+F     +R + +G  + A   A++++N+ I++ G   ++  D+H+ Q   YF 
Sbjct: 168 VTAVVPYFGYARSDR-KTQGRESIA---AKLVANV-ITKAGADRVLACDLHSGQSMGYFD 222

Query: 158 DHVLPLFETGIPLLKQRLHQLPDSDKIVVAFPDDGAWKR---FHKLLDHFPMVVCTKVRE 214
             V  ++   + +L     +    + +VV  PD G   R   F K L   P+ +  K R+
Sbjct: 223 IPVDHIYCQPV-ILDYLASKTICCNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQ 281

Query: 215 GDK--RIVRLKEGNPAGCHVVIVDDLVQSGGTLIE 247
           G     ++ L  G+  G   V+VDD++ + GT+ +
Sbjct: 282 GHNVAEVMNLI-GDVKGKVAVMVDDMIDTAGTITK 315