Jatropha Genome Database

JcCB0037791.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0037791.20 - phase: 1 /TE/pseudo/partial
         (552 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014094001 assembled CDS                                        77   2e-14
GSVIVT01015587001 assembled CDS                                        63   4e-10
GSVIVT01008224001 assembled CDS                                        57   3e-08
GSVIVT01017364001 assembled CDS                                        57   3e-08

>GSVIVT01014094001 assembled CDS
          Length = 677

 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 18/220 (8%)

Query: 312 KKKWLSYFKNIPPLYLVAIVFDPRYRIDVLCDYLTIYYDILNLDVEDNININVVMHEVKQ 371
           K K+  Y+        VA++ DPR+++ ++  Y   Y  I   D  D I       +V  
Sbjct: 460 KAKFDKYWSKCSLALAVAVILDPRFKMKLVEYY---YPQIYGTDAADRIK------DVSD 510

Query: 372 NIMQLYNEFXXXXXXXXXXXXXXXXNIPQFPTQRVNGVGVAQQVLLQRQKRTRESSSISE 431
            I +L+N +                ++P       + +    + +    + ++  + +S+
Sbjct: 511 GIKELFNVYCSTSASLHQGVALPGSSLPSTSNDSRDRLKGFDKFI---HETSQNQNIVSD 567

Query: 432 FDNYLTTSFEFGDDYADTDFPILDWWSRHANTFPILSLLAKQILAAPVSIVAVEQAFSXG 491
            D YL     F     + DF IL+WW      +PILS++ + +L  P+S VA E  FS G
Sbjct: 568 LDKYLEEPV-FP---RNCDFHILNWWKVQKPRYPILSMMVRDVLGIPMSTVAPEVVFSTG 623

Query: 492 GNILDETRSRMTPDSLEAQACVDDW--TKAELRAQENPKE 529
             +LD  RS + PD+ +A  C  DW  T  E   Q +P +
Sbjct: 624 ARVLDHYRSSLNPDTRQALICTQDWLQTGLEEPNQSSPHQ 663


>GSVIVT01015587001 assembled CDS
          Length = 839

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 35/212 (16%)

Query: 318 YFKNIPPLYLVAIVFDPRYRIDVLC-DYLTIYYDILNLDVEDNININVVMHEVKQNIMQL 376
           Y+K+   +  +A+  DPR+++ ++   +  IY D               +  V + + +L
Sbjct: 546 YWKDCGLVLAIAVAMDPRFKMKLVEFSFPKIYGDEA---------APTCIRVVDEGLHEL 596

Query: 377 YNEFXXXXXXXXXXXXXXXXNIPQFPTQRVNGVGVAQQVLLQRQKRTRESSSISEFDNYL 436
           + E+                 +P  PT    G   + +     Q     S+ +S+FD Y+
Sbjct: 597 FLEYVALP-------------LPLTPTYVDEGNAGSMKGEDHSQGGLLSSNGLSDFDVYI 643

Query: 437 --TTSFEFG---DDYADT-------DFPILDWWSRHANTFPILSLLAKQILAAPVSIVAV 484
             T+S +     D Y +        +F +L WW  +   +P LS +A+ IL+ PVS VAV
Sbjct: 644 LETSSQQMKSELDQYLEESVLPRVHEFDLLGWWKLNKLKYPTLSKMARDILSIPVSSVAV 703

Query: 485 EQAFSXGGNILDETRSRMTPDSLEAQACVDDW 516
           E  +   G  +DE R+ + P+++EA  C  DW
Sbjct: 704 ESIYDTVGKEMDEYRNSLRPETVEALICAKDW 735


>GSVIVT01008224001 assembled CDS
          Length = 680

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 7/117 (5%)

Query: 407 NGVGVA-QQVLLQRQKRTRESSSISEFDNYLTTSFEFGDDYADTDFPILDWWSRHANTFP 465
           +G  V+  + + ++++R   S++  E   YL+      +  A     +L+WW  +   +P
Sbjct: 537 DGASVSFAEEIARKKRRVSMSTATDELTQYLS------EPPAPIPTDVLEWWKVNTTRYP 590

Query: 466 ILSLLAKQILAAPVSIVAVEQAFSXGGNILDETRSRMTPDSLEAQACVDDWTKAELR 522
            LS +A+  LA   + VA E+ F   G+ +D+ R  M  DS +A  C+  WT   ++
Sbjct: 591 RLSTMARDFLAVQATSVAPEEVFCGKGDEMDKQRFSMPHDSTQALLCIRSWTHGGIK 647


>GSVIVT01017364001 assembled CDS
          Length = 295

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 430 SEFDNYLTTSFEFGDDYADTDFPILDWWSRHANTFPILSLLAKQILAAPVSIVAVEQAFS 489
           SE D YL  S          DF +L WW  +   +P LS +A  IL+ P++ V  +  F 
Sbjct: 193 SELDQYLDESLM----PRSQDFDVLAWWKLNKLKYPTLSRMASDILSIPITTVGPDNVFD 248

Query: 490 XGGNILDETRSRMTPDSLEAQACVDDW 516
             G  +D  RS + P +LEA  C  DW
Sbjct: 249 TVGRKIDSYRSSLRPLTLEALICAKDW 275