Jatropha Genome Database

JcCB0037361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0037361.10 - phase: 0 /partial
         (240 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027912001 assembled CDS                                        53   2e-07

>GSVIVT01027912001 assembled CDS
          Length = 314

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 4/91 (4%)

Query: 154 DESDDNFDGLEMKHMQNVEQAVEAR----ELPDVSEPSLLLSEKARNALYASLPALVQGR 209
           +E +D+  G         E+A E        P++++ S  +S      L +SLP +V+G 
Sbjct: 106 EEDEDHGSGRSTSSSDVFEEATELHSSENPAPNLTDNSSFISSDLYEFLLSSLPNIVKGC 165

Query: 210 KWLLLYSTWRHGISLATLYRRSMLWPGLSLL 240
           +W+LLYST +HGISL TL R+S    G  LL
Sbjct: 166 QWVLLYSTLKHGISLRTLIRKSADLSGPCLL 196