Jatropha Genome Database

JcCB0037201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0037201.10 - phase: 2 /pseudo/partial
         (187 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033776001 assembled CDS                                       127   4e-30

>GSVIVT01033776001 assembled CDS
          Length = 367

 Score =  127 bits (318), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 68/78 (87%), Gaps = 8/78 (10%)

Query: 26  LLYILDYFFYEEYMTSTWDIIAERLGFMLVFGDLVWIPFTFSIQACSYEPDLGWWLLGNK 85
           +LYILDYFFYEEYMTSTWDIIAERLGFMLVFGDLVWIPFTFSIQ        GWWLL N+
Sbjct: 183 VLYILDYFFYEEYMTSTWDIIAERLGFMLVFGDLVWIPFTFSIQ--------GWWLLRNQ 234

Query: 86  VELTMAAVIANCFVFLIG 103
           V+LT AA++ANCFVFL+G
Sbjct: 235 VDLTTAAIVANCFVFLMG 252