Jatropha Genome Database

JcCB0036911.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0036911.20 + phase: 0 /partial
         (316 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002010001 assembled CDS                                       401   e-112
GSVIVT01009290001 assembled CDS                                       259   1e-69
GSVIVT01032523001 assembled CDS                                       259   2e-69
GSVIVT01033168001 assembled CDS                                       177   6e-45
GSVIVT01016135001 assembled CDS                                       176   1e-44
GSVIVT01033767001 assembled CDS                                       134   8e-32
GSVIVT01034719001 assembled CDS                                       125   3e-29
GSVIVT01025737001 assembled CDS                                       119   2e-27
GSVIVT01031405001 assembled CDS                                       100   6e-22

>GSVIVT01002010001 assembled CDS
          Length = 630

 Score =  401 bits (1030), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/327 (67%), Positives = 250/327 (76%), Gaps = 15/327 (4%)

Query: 1   MSPSQNQEFQEWWNKQRQ-----FLDQNDNALL--TVEIRSPATVDTTVDKDHTRSARQL 53
           MS  QN EFQEWWNKQR+     F+D+++   L  +VEI +P T D  VDK+ TRSARQL
Sbjct: 1   MSRPQNYEFQEWWNKQREKHHDLFIDKSETQRLFTSVEIHTP-TADPAVDKERTRSARQL 59

Query: 54  SWLWILKFQQLATSLAWLTNGLFYLLRTANRRIAXXXXXXXXXXXXX--XXXXXXXXXXX 111
           SW+ +LK QQLA+S+A+L+NG   +LRTANRRIA                          
Sbjct: 60  SWVCLLKLQQLASSIAYLSNGFVAILRTANRRIASSSVAADSSRSESRLYHAIKVFLVVV 119

Query: 112 XXXXXXXXXAYFKGWHFSPPSVESAEL----MVERVYAKWLEIRANYLAPPLQSLANVCI 167
                    AYFKGWHFSPPS+ SAE+    +VE VYA WL+IRANYLAPPLQSL NVCI
Sbjct: 120 LVLLLFELVAYFKGWHFSPPSLSSAEVEVLGLVELVYANWLKIRANYLAPPLQSLTNVCI 179

Query: 168 VLFLIQSVDRAVLVLGCFWIRVRKLKPAATVEYG-NVNGENVEDYPMVLVQIPMCNEREV 226
           VLFLIQSVDR VL+LGCFWI+ RKLKP A +E+  N  G+NV+DYPMVLVQIPMCNEREV
Sbjct: 180 VLFLIQSVDRIVLMLGCFWIKFRKLKPVAVMEFSENSEGQNVQDYPMVLVQIPMCNEREV 239

Query: 227 YQQSIAAVCIQDWPKERMLVQVLDDSDELNVQLLIKAEVQKWQQRGVHILYRHRLIRTGY 286
           YQQSIAAVCIQDWP+ERMLVQVLDDSD+L+VQ LIKAEVQKWQQRG+ ILYRHRLIRTGY
Sbjct: 240 YQQSIAAVCIQDWPRERMLVQVLDDSDDLDVQHLIKAEVQKWQQRGLRILYRHRLIRTGY 299

Query: 287 KAGNLKSAMSCDYVKDYEFVAIFDADF 313
           KAGNLKSAMSCDYVKDYEFVAIFDADF
Sbjct: 300 KAGNLKSAMSCDYVKDYEFVAIFDADF 326


>GSVIVT01009290001 assembled CDS
          Length = 647

 Score =  259 bits (662), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 141/282 (50%), Positives = 174/282 (61%), Gaps = 39/282 (13%)

Query: 36  ATVDTTVDKDHTRSARQLSWLWILKFQQLATSLAWLTNGLFYLLRTANRRIAXXXXXXXX 95
            + +T  DK   ++ARQL+W+ +LK  + A  L  + + +F L       ++        
Sbjct: 44  GSPNTNRDKGRGKNARQLTWVLLLKAHKAAGCLTSIASAMFGLAAAVFLWLSVVLLVFEV 103

Query: 96  XXXXXXXXXXXXXXXXXXXXXXXXXAYFKGWHFSPPSVESAELMVERVYAKWLEIRANYL 155
                                    AYFK    +P  V+    +   +Y++W+ IR  YL
Sbjct: 104 A------------------------AYFK----APYGVKD---IFNSLYSRWVLIRVEYL 132

Query: 156 APPLQSLANVCIVLFLIQSVDRAVLVLGCFWIRVRKLKP----AATVEYGNVNGENVEDY 211
           APPLQ LAN CIVLFLIQSVDR VL LGCFWI+ +K+KP       +E G+ NG     +
Sbjct: 133 APPLQFLANACIVLFLIQSVDRLVLCLGCFWIKFKKIKPVPKGTVDLESGDGNGY----F 188

Query: 212 PMVLVQIPMCNEREVYQQSIAAVCIQDWPKERMLVQVLDDSDELNVQLLIKAEVQKWQQR 271
           P VLVQIPMCNE+EVYQQSIAA C  DWPK  +L+QVLDDSD+   QL+IK EV KWQQ 
Sbjct: 189 PRVLVQIPMCNEKEVYQQSIAACCNLDWPKSSILIQVLDDSDDPVTQLMIKEEVTKWQQE 248

Query: 272 GVHILYRHRLIRTGYKAGNLKSAMSCDYVKDYEFVAIFDADF 313
           G HILYRHR+IR GYKAGNLKSAM+C YVKDYEFVAIFDADF
Sbjct: 249 GAHILYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADF 290


>GSVIVT01032523001 assembled CDS
          Length = 662

 Score =  259 bits (661), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 134/289 (46%), Positives = 176/289 (60%), Gaps = 5/289 (1%)

Query: 30  VEIRSPATVDTTVDKDHTRSARQLSWLWILKFQQLATSLAWLTNGLFYLLRTANRRIAXX 89
           VEI    T     +K+   S +Q +W+ +LK  +    L+WL  G + +   A +R+A  
Sbjct: 19  VEITGSKT-SMFPEKEKAASPKQFTWVLLLKVHRALACLSWLATGAWTVFVAAKKRLALS 77

Query: 90  XXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXAYFKGWHFSPPSVESAELMVERVYAKW 147
                                            A+FK W+ +       + +V+  Y  W
Sbjct: 78  EIKEEEPTNRGRLYRFIRAFVFISIVALFMEVIAHFKKWNLNLIQPLEVQGLVQWSYMAW 137

Query: 148 LEIRANYLAPPLQSLANVCIVLFLIQSVDRAVLVLGCFWIRVRKLKPAATVEYGNVNGEN 207
           L  R +Y+AP +  L+  CIVLFLIQS+DR  L  GCFWI+ +KLKP    +  ++  E+
Sbjct: 138 LSFRVDYIAPLVLILSKFCIVLFLIQSLDRLFLCFGCFWIKHKKLKPEMDADAYDI--ED 195

Query: 208 VEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKERMLVQVLDDSDELNVQLLIKAEVQK 267
              +PMVLVQIPMCNE+EVY QSI+AVC  DWP+ER+L+QVLDDSD+ NVQLLIK EV  
Sbjct: 196 GSSFPMVLVQIPMCNEKEVYAQSISAVCQLDWPRERLLIQVLDDSDDENVQLLIKNEVSS 255

Query: 268 WQQRGVHILYRHRLIRTGYKAGNLKSAMSCDYVKDYEFVAIFDADFSQD 316
           W Q+GV+I+YRHR +RTGYKAGNLKSAM+CDYVKDYEFVAIFDADF  +
Sbjct: 256 WNQKGVNIIYRHRFVRTGYKAGNLKSAMACDYVKDYEFVAIFDADFQPN 304


>GSVIVT01033168001 assembled CDS
          Length = 403

 Score =  177 bits (449), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 80/101 (79%), Positives = 94/101 (93%)

Query: 213 MVLVQIPMCNEREVYQQSIAAVCIQDWPKERMLVQVLDDSDELNVQLLIKAEVQKWQQRG 272
           MVLVQIPMCNEREVY+QSI+AVC  DWPK+R+L+QVLDDSD+ ++Q LIKAEV  W Q+G
Sbjct: 1   MVLVQIPMCNEREVYEQSISAVCQIDWPKDRLLIQVLDDSDDESIQCLIKAEVYNWSQQG 60

Query: 273 VHILYRHRLIRTGYKAGNLKSAMSCDYVKDYEFVAIFDADF 313
           ++I+YRHRL+RTGYKAGNLKSAMSCDYVK+YEFVAIFDADF
Sbjct: 61  INIVYRHRLVRTGYKAGNLKSAMSCDYVKNYEFVAIFDADF 101


>GSVIVT01016135001 assembled CDS
          Length = 436

 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 93/101 (92%)

Query: 213 MVLVQIPMCNEREVYQQSIAAVCIQDWPKERMLVQVLDDSDELNVQLLIKAEVQKWQQRG 272
           MVLVQIPMCNEREVY+QSI+AVC  DWPK+R+L+QVLDDSD+ ++Q LIK EV KW Q+G
Sbjct: 1   MVLVQIPMCNEREVYEQSISAVCQLDWPKDRLLIQVLDDSDDESIQWLIKGEVSKWSQKG 60

Query: 273 VHILYRHRLIRTGYKAGNLKSAMSCDYVKDYEFVAIFDADF 313
           ++I+YRHRL+RTGYKAGNLKSAM+CDYVK YEFVAIFDADF
Sbjct: 61  INIIYRHRLVRTGYKAGNLKSAMNCDYVKAYEFVAIFDADF 101


>GSVIVT01033767001 assembled CDS
          Length = 540

 Score =  134 bits (336), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 141 ERVYAKWLEIRANYLAPPLQSLANVCIVLFLIQSVDRAVLVLGCFWIRVRKLKPAA---- 196
           E++   W +I+A  + P +     VC+ + L+   +R  L +    +++   KP      
Sbjct: 23  EQLGVVWSQIKAPVIVPLMSIAVAVCLAMSLMLFFERVYLSIVIVLVKLFGRKPDKRYKW 82

Query: 197 -----TVEYGNVNGENVEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKERMLVQVLDD 251
                 VE GN        YPMVLVQIPM NE+EVYQ SI A C   WP +R+++QVLDD
Sbjct: 83  EPMKDDVELGN------SAYPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLDD 136

Query: 252 SDELNVQLLIKAEVQKWQQRGVHILYRHRLIRTGYKAGNLKSAMSCDYVKDYEFVAIFDA 311
           S +  ++ L++ E Q+W  +G++I Y  R  R GYKAG LK  M   YVK+ ++VAIFDA
Sbjct: 137 STDPTIKDLVELECQRWASKGINIKYEIRNNRNGYKAGALKEGMKHSYVKECDYVAIFDA 196

Query: 312 DFSQD 316
           DF  +
Sbjct: 197 DFQPE 201


>GSVIVT01034719001 assembled CDS
          Length = 449

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/119 (52%), Positives = 78/119 (65%), Gaps = 6/119 (5%)

Query: 198 VEYGNVNGENVEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKERMLVQVLDDSDELNV 257
           VE GN        YPMVLVQIPM NE+EVYQ SI A C   WP ER+++QVLDDS +  +
Sbjct: 5   VELGN------SAYPMVLVQIPMYNEKEVYQLSIGAACGLSWPSERIIIQVLDDSTDPTI 58

Query: 258 QLLIKAEVQKWQQRGVHILYRHRLIRTGYKAGNLKSAMSCDYVKDYEFVAIFDADFSQD 316
           + L++ E Q+W  +G++I Y  R  R GYKAG LK  M   YVK  ++VAIFDADF  +
Sbjct: 59  KDLVEMECQRWASKGINIKYEIRGNRHGYKAGALKEGMKHSYVKQCDYVAIFDADFQPE 117


>GSVIVT01025737001 assembled CDS
          Length = 443

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 91/146 (62%), Gaps = 1/146 (0%)

Query: 168 VLFLIQSVDRAVLVLGCFWIRVRKLKPAATVEYGNVNGENVEDYPMVLVQIPMCNEREVY 227
           ++  I+ V  A+++L C  +  +K      ++    + E  + YP VL+QIPM NE+EVY
Sbjct: 3   IMLFIERVYMAIIIL-CVKVMRKKRYTKYKLDTMKEDLELNKSYPKVLIQIPMYNEKEVY 61

Query: 228 QQSIAAVCIQDWPKERMLVQVLDDSDELNVQLLIKAEVQKWQQRGVHILYRHRLIRTGYK 287
           + SI A C   WP +R ++QVLDDS    ++++++ E +KW  +GV++ Y  R  R GYK
Sbjct: 62  KLSIGAACSVSWPSDRFIIQVLDDSTNEALRVMVELECRKWIDKGVNVKYETRNNRNGYK 121

Query: 288 AGNLKSAMSCDYVKDYEFVAIFDADF 313
           AG L+  +   YV+D EFVAIFDADF
Sbjct: 122 AGALREGLQKQYVEDCEFVAIFDADF 147


>GSVIVT01031405001 assembled CDS
          Length = 429

 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 66/97 (68%)

Query: 220 MCNEREVYQQSIAAVCIQDWPKERMLVQVLDDSDELNVQLLIKAEVQKWQQRGVHILYRH 279
           M NE+EVY+ SI A C   WP +R+++QVLDDS +  ++ L++ E Q+W  +G++I Y+ 
Sbjct: 1   MYNEKEVYKLSIGAACGLSWPADRLVIQVLDDSTDPAIKNLVETECQRWAAKGINIRYQI 60

Query: 280 RLIRTGYKAGNLKSAMSCDYVKDYEFVAIFDADFSQD 316
           R  R GYKAG L+  +   YVK  E+VAIFDADF  +
Sbjct: 61  RENRVGYKAGALREGLKRSYVKHCEYVAIFDADFQPE 97