Jatropha Genome Database

JcCB0036891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0036891.10 - phase: 1 /pseudo/partial
         (367 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035168001 assembled CDS                                       539   e-154
GSVIVT01009087001 assembled CDS                                       224   4e-59
GSVIVT01011096001 assembled CDS                                        98   6e-21
GSVIVT01016183001 assembled CDS                                        52   5e-07
GSVIVT01037695001 assembled CDS                                        50   1e-06
GSVIVT01033801001 assembled CDS                                        48   9e-06

>GSVIVT01035168001 assembled CDS
          Length = 809

 Score =  539 bits (1388), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 258/327 (78%), Positives = 292/327 (89%), Gaps = 8/327 (2%)

Query: 39  GGGAEVETMVVVDQPKLRRRYQVSEGHPAPFGATASDDGVNFSVYSTNAVSASLCLISLD 98
           G GAE ET VVV++PKL+  + V EG PAP GATA D GVNF+VYS NAVSA+LCLIS  
Sbjct: 67  GSGAEAET-VVVEKPKLQP-FLVFEGCPAPLGATARDGGVNFAVYSGNAVSATLCLISAS 124

Query: 99  DLPKNKVTEEIPLDPLTNKTGDIWHVFLKGDFKDMLYGYRFDGKLSPEEGHYFESSEIVL 158
           DL +++VTE+I LDPLTNKTGD+WHVFLKG+F++++YGY+FDGK SPEEGHY++SS ++L
Sbjct: 125 DLEEDRVTEQISLDPLTNKTGDVWHVFLKGNFENIVYGYKFDGKFSPEEGHYYDSSRLLL 184

Query: 159 DPYAKAVISRGEFGVLGPDDNCWPQMAGMIPAARDKFDWEGDLPLKYPQKDLMIYEMHVR 218
           DPYAKAVISRGEFG+LGP+ NCWP MAGMIP++  +FDWEGDLPLKYPQKDL+IYEMHVR
Sbjct: 185 DPYAKAVISRGEFGILGPEGNCWPLMAGMIPSSDAEFDWEGDLPLKYPQKDLIIYEMHVR 244

Query: 219 GFTQHESSRTEFPGTYLGVVEKLDHLKELGVNCIELMPCHEFNELEYYSYNSVLGDYK-- 276
           GFT+HESSRT+FPGTY GVVEKLDHLKELGVNCIELMPCHEFNELEY+SYNSVL DY+  
Sbjct: 245 GFTRHESSRTKFPGTYHGVVEKLDHLKELGVNCIELMPCHEFNELEYFSYNSVLDDYRYT 304

Query: 277 ----MNFWGYSTVNYFSPMTRYSSAGTRNCGHDAINEFKLLVREAHKRGIEVIMDVVFNH 332
               +NFWGYSTVNYFSPM RYSSAG  NCGHDAINE KLL+REAHKRGIEV+MDVVFNH
Sbjct: 305 CISMVNFWGYSTVNYFSPMIRYSSAGIHNCGHDAINEVKLLIREAHKRGIEVLMDVVFNH 364

Query: 333 TAEGNEKGPILSFRGVDNSVYYMLAPK 359
           TAEGNE GPILSFRGVDNSVYYMLAPK
Sbjct: 365 TAEGNENGPILSFRGVDNSVYYMLAPK 391


>GSVIVT01009087001 assembled CDS
          Length = 775

 Score =  224 bits (572), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 126/305 (41%), Positives = 187/305 (61%), Gaps = 14/305 (4%)

Query: 60  QVSEGHPAPFGATASDDGVNFSVYSTNAVSASLCLISLDDLPKNKVTE---EIPLDPLTN 116
           +V  G   P G +  ++G+NF+++S +A +  LCL       K+++ +   E+ LD   N
Sbjct: 93  KVLPGQAFPLGVSEVENGINFAIFSQHATAIVLCLFLPQRGKKDRMDDLMVELTLDADVN 152

Query: 117 KTGDIWHVFLKG-DFKDMLYGYRFDGKLSPEEGHYFESSEIVLDPYAKAVISRGEFGVLG 175
           +TGDIWH+ ++     ++LYGY  DG     +GH F++S +++DPYAK V  R  FG   
Sbjct: 153 RTGDIWHICVEDLPRSNVLYGYCIDGPRDWHQGHRFDNSTVLIDPYAKLVEGRRFFG--- 209

Query: 176 PDDNCWPQMAGMIPAARDKFDWEGDLPL-KYPQKDLMIYEMHVRGFTQHESSRTE--FPG 232
              N W +  G        FDW  +  +   P+KDL+IYEM+VR FT  +SS  +    G
Sbjct: 210 DASNKWSKFLGTYDFDSLPFDWGDNYKVPSIPEKDLVIYEMNVRAFTADKSSGLDPNVRG 269

Query: 233 TYLGVVEKLDHLKELGVNCIELMPCHEFNELEYYSYNSVLGDYKMNFWGYSTVNYFSPMT 292
           +YLGV+EK+ HL +LG+N +EL+P  EF+E E+    +   D+ +N WGYST+N+F+PM+
Sbjct: 270 SYLGVIEKIPHLLDLGINAVELLPVFEFDEFEFQRRPNPR-DHMINTWGYSTINFFAPMS 328

Query: 293 RYSSAGTRNCGHDAINEFKLLVREAHKRGIEVIMDVVFNHTAEGNEKGP-ILSFRGVDNS 351
           RY+SAG       A  EFK +V+  H  GIEVI+DVV+NHT E +++ P   SFRG+DN 
Sbjct: 329 RYASAGGGPI--KASREFKEMVKALHGAGIEVILDVVYNHTNEADDENPYTTSFRGIDNK 386

Query: 352 VYYML 356
           VYYM+
Sbjct: 387 VYYMV 391


>GSVIVT01011096001 assembled CDS
          Length = 447

 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 102/206 (49%), Gaps = 31/206 (15%)

Query: 151 FESSEIVLDPYAKAVISRGEFGVLGPDDNCWPQMAGMIPAARDKFDWEGDLPLKYPQKDL 210
           F++  + LDPYAK +  R  F     D    PQ           F+W  D+    P + L
Sbjct: 158 FQNLHVHLDPYAKLI--RNSFS---DDHGLKPQPRLGELQKEPAFNWNDDVHPYIPMEKL 212

Query: 211 MIYEMHVRGFTQHESSR--TEFPGTYLGVVEKLDHLKELGVNCIELMPCHEFNELEYYSY 268
           ++Y ++V  FT+ ESS+  ++  GT+ G++EKL H K+LGVN + L P   F+E +    
Sbjct: 213 VVYRLNVMHFTKDESSQVASDLAGTFSGLMEKLHHFKDLGVNAVLLEPIFSFDEQK---- 268

Query: 269 NSVLGDYKMNFWGYSTVNYFSPMTRYSSAGTRNCGHDAINEFKLLVREAHKRGIEVIMDV 328
                        Y   ++FSPM  Y   G  +     IN  K +V+  H  GIEV+++V
Sbjct: 269 -----------GPYFPFHFFSPMNVY---GPSSGPVSTINSVKEMVKRLHANGIEVLLEV 314

Query: 329 VFNHTAEGNEKGPILSFRGVDNSVYY 354
           VF HTAE        + +G+D+S YY
Sbjct: 315 VFTHTAESG------ALQGIDDSCYY 334


>GSVIVT01016183001 assembled CDS
          Length = 956

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 34/155 (21%)

Query: 209 DLMIYEMHVRGFTQHESS-RTEFPGTYLGVVEK----LDHLKEL---GVNCIELMPCHEF 260
           D+ IYE+H+R F+  + +   +F G YL    +    + HLK+L   G++ + L+P  +F
Sbjct: 323 DISIYELHIRDFSASDHTVHPDFRGGYLAFTSQDSAGILHLKKLCNAGISHLHLLPTFQF 382

Query: 261 ---------------NELEYYSYNSV--------LGDYKMNFWGYSTVNYFSPMTRYSSA 297
                          N LE    +SV        + D     WGY+ V +  P   Y+S 
Sbjct: 383 AGVDDEKDKWKCVDPNILETLPPDSVEQQAQIMTIQDEDGYNWGYNPVLWGVPKGSYASN 442

Query: 298 GTRNCGHDAINEFKLLVREAHKRGIEVIMDVVFNH 332
               C      EF+ +V+  ++ G  V++DVV+NH
Sbjct: 443 PNSPC---RTLEFRKMVQALNRIGFRVVLDVVYNH 474


>GSVIVT01037695001 assembled CDS
          Length = 896

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 34/149 (22%)

Query: 208 KDLMIYEMHV--RGFTQHESSRTEFPGTYLGVVEKLDHLKELGVNCIELMPCHEFNELEY 265
           K L IYE HV   G  Q  SS  EF          L H+KE G N I+L+       +E+
Sbjct: 393 KSLRIYECHVGISGSEQKISSFNEF------TENVLPHIKEAGYNAIQLIGV-----VEH 441

Query: 266 YSYNSVLGDYKMNFWGYSTVNYFSPMTRYSSAGTRNCGHDAINEFKLLVREAHKRGIEVI 325
             Y+SV         GY   N ++  +RY +           ++FK LV EAH +G+ V 
Sbjct: 442 KDYSSV---------GYKVTNLYATSSRYGTP----------DDFKRLVDEAHGQGMLVF 482

Query: 326 MDVVFNHTAEGNEKGPILSFRGVDNSVYY 354
           +D+V +++A     G  LS     N  Y+
Sbjct: 483 LDIVHSYSAADEMVG--LSLFDGSNDCYF 509


>GSVIVT01033801001 assembled CDS
          Length = 859

 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 35/157 (22%)

Query: 203 LKYPQ----KDLMIYEMHVRGFTQHESSRTEFPGTYLGVVEK-LDHLKELGVNCIELMPC 257
            ++PQ    K L IYE HV       SS      TY    +  L  +K LG N +++M  
Sbjct: 329 FQHPQPKKPKSLRIYEAHV-----GMSSMEPVVNTYANFRDDVLPRIKRLGYNAVQIMAI 383

Query: 258 HEFNELEYYSYNSVLGDYKMNFWGYSTVNYFSPMTRYSSAGTRNCGHDAINEFKLLVREA 317
            E         +S  G +     GY   N+F+P +R        CG    ++ K L+ +A
Sbjct: 384 QE---------HSYYGSF-----GYHVTNFFAPSSR--------CG--TPDDLKSLIDKA 419

Query: 318 HKRGIEVIMDVVFNHTAEGNEKGPILSFRGVDNSVYY 354
           H+ G+ V+MD+V +H A  N    +  F G D+  ++
Sbjct: 420 HELGLLVLMDIVHSH-ASNNVLDGLNRFDGTDSHYFH 455