Jatropha Genome Database
- JcCB0036391.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0036391.20 - phase: 2 /TE/partial
(764 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01013655001 assembled CDS 176 6e-44
GSVIVT01012382001 assembled CDS 171 2e-42
GSVIVT01000641001 assembled CDS 161 1e-39
GSVIVT01031724001 assembled CDS 154 1e-37
GSVIVT01017026001 assembled CDS 141 1e-33
GSVIVT01009548001 assembled CDS 129 6e-30
GSVIVT01028343001 assembled CDS 120 4e-27
GSVIVT01024357001 assembled CDS 115 1e-25
GSVIVT01028612001 assembled CDS 89 8e-18
GSVIVT01014104001 assembled CDS 87 3e-17
GSVIVT01013341001 assembled CDS 86 7e-17
GSVIVT01010555001 assembled CDS 70 4e-12
GSVIVT01015960001 assembled CDS 66 6e-11
GSVIVT01034745001 assembled CDS 62 7e-10
GSVIVT01018138001 assembled CDS 53 5e-07
>GSVIVT01013655001 assembled CDS
Length = 4396
Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 81/140 (57%), Positives = 107/140 (76%), Gaps = 1/140 (0%)
Query: 568 TVNKLSQYMQHPNADHWLALKRLLRYLKSTIYYGISIIKQADFGFHAYSDADWASDPSDR 627
T+NKLSQ+M P +DHW A+KRLLRYL T+ +GI++ + + HA+SD+DWA + D
Sbjct: 4254 TMNKLSQFMHQPTSDHWNAVKRLLRYLCGTLDHGITLRRTSPLALHAFSDSDWAGNKDDF 4313
Query: 628 TSTTGFILYLGKVPISWSSKKQRTVARSSTEAEYRAVASTASEVKWVTSLLRELGQEV-D 686
TST+ +I+YLG PISWSSKKQRTVARSSTEAEYR+VASTA+E++W+ SLL ELG +
Sbjct: 4314 TSTSAYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELGVTLPQ 4373
Query: 687 TPVIYCDNISTMYTCQNLVF 706
PVIYCDN+ + C L++
Sbjct: 4374 QPVIYCDNVGATHLCAILLY 4393
>GSVIVT01012382001 assembled CDS
Length = 952
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 123/194 (63%), Gaps = 2/194 (1%)
Query: 569 VNKLSQYMQHPNADHWLALKRLLRYLKSTIYYGISIIKQADFGFHAYSDADWASDPSDRT 628
V+ +SQYM P H +KR+LRYLK TI GI + + +SD+DWA + DR
Sbjct: 751 VSLVSQYMHAPTVVHLCMVKRILRYLKKTIGRGIVMRRNGHTDIIGFSDSDWAGNTIDRR 810
Query: 629 STTGFILYLGKVPISWSSKKQRTVARSSTEAEYRAVASTASEVKWVTSLLRELGQEVDTP 688
STTG+ +++G +SW SKKQ VARSS EAEYRA+A+ + E+ W+ +LL +LG +P
Sbjct: 811 STTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASCEMVWLKNLLTDLGFSPTSP 870
Query: 689 V-IYCDNISTMYTCQNLVFHTRMKHLEIDIHFVREMVQRGEIRVTHISSKDQLAD-ITKS 746
+ ++CDN + M+ N VFH R KH+E+D HF+R+ VQ I+ +I S DQLAD TK
Sbjct: 871 MKLFCDNQAAMHIAANPVFHERTKHIEVDCHFIRQQVQSKVIQTHYIRSSDQLADAFTKV 930
Query: 747 LSKVKFQQNRAKIG 760
LS F + K+G
Sbjct: 931 LSSTVFHRLMFKLG 944
>GSVIVT01000641001 assembled CDS
Length = 947
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 132/216 (61%), Gaps = 2/216 (0%)
Query: 543 VDATAYRKLIGGLQYLNLTRPDIAFTVNKLSQYMQHPNADHWLALKRLLRYLKSTIYYGI 602
VD+ Y++++G L YL TRPDI +V+ +S+YM++P H+LA K++ RYL+ T +G+
Sbjct: 231 VDSIIYKQIVGSLMYLTATRPDIMHSVSLISRYMENPTELHFLAAKKICRYLQGTKDFGL 290
Query: 603 SIIKQADFGFHAYSDADWASDPSDRTSTTGFILYLGKVPISWSSKKQRTVARSSTEAEYR 662
K ++D+D+A D +R ST+G++ LG +SWSSKKQ V S+TEAE+
Sbjct: 291 FYKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTTEAEFV 350
Query: 663 AVASTASEVKWVTSLLRELG-QEVDTPVIYCDNISTMYTCQNLVFHTRMKHLEIDIHFVR 721
A A + W+ +L EL ++V I+CDN ST+ +N V H R KH+++ +F+R
Sbjct: 351 AATVCACQAIWLRKILEELHLKQVGATTIFCDNSSTIKLSKNPVLHGRSKHIDVKYYFLR 410
Query: 722 EMVQRGEIRVTHISSKDQLADI-TKSLSKVKFQQNR 756
++ G I + + S++Q+ADI TK L F + R
Sbjct: 411 DLSNDGVIDLVYCRSENQVADIFTKPLKLAVFLELR 446
>GSVIVT01031724001 assembled CDS
Length = 1135
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 507 YIQKLLEHAKMDGAKEISTPMASDIQLQKXKNETLPVDATAYRKLIGGLQYLNLTRPDIA 566
YI LL+ A + +K +++PMA L + T D T YR L+G LQY +TRPDIA
Sbjct: 950 YICDLLQRAGLSESKLVTSPMAVGHVLSI-ADGTRFEDPTLYRSLVGALQYCTITRPDIA 1008
Query: 567 FTVNKLSQYMQHPNADHWLALKRLLRYLKSTIYYGISIIKQADFGFHAYSDADWASDPSD 626
+T+NK Q+M P + H A+KR+LRYLK +++YG+S + AY+DAD AS P D
Sbjct: 1009 YTINKFFQFMHAPTSTHLQAVKRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADGASCPDD 1068
Query: 627 RTSTTGFILYLGKVPISWSSKKQRTVARSSTEAEYRAVASTASEVKWVTSLLREL 681
R ST G+ ++ ISWS+ KQ+ V+RSS E++YR +A+ E+ W+ SLL+EL
Sbjct: 1069 RRSTNGYCIFFRGNLISWSASKQKVVSRSSIESKYRGLANATIELTWIQSLLKEL 1123
>GSVIVT01017026001 assembled CDS
Length = 1273
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 83/128 (64%)
Query: 5 ALKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAFRTAA 64
K + + GI+H S P+TP NG AER+HRH+ ETGLTLL + L FW AF TA
Sbjct: 1141 CFKAHLRTSGIHHQLSCPYTPAQNGRAERKHRHVTETGLTLLFHSHLSPRFWVDAFSTAT 1200
Query: 65 YLINRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPCVFLG 124
Y+INRLPT LL SP+E L G +P+Y + F C YPCLR YM NK RS+PC+FLG
Sbjct: 1201 YIINRLPTPLLGGKSPFELLYGYSPHYENFHPFGCRVYPCLRDYMPNKLSPRSIPCIFLG 1260
Query: 125 YSPNKSAY 132
YSP+ +
Sbjct: 1261 YSPSHKGF 1268
>GSVIVT01009548001 assembled CDS
Length = 849
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 127/229 (55%), Gaps = 12/229 (5%)
Query: 545 ATAYRKLIGGLQYLN-LTRPDIAFTVNKLSQYMQHPNADHWLALKRLLRYLKSTIYYGIS 603
A Y IG L Y RP+I F VN L +Y+ + HW+A K+++RYL+ T + +
Sbjct: 593 AIPYASAIGSLMYAQACIRPNIVFIVNVLGRYLSNLGQYHWVAAKKVMRYLQRTNDFMLV 652
Query: 604 IIKQADFGFHAYSDADWASDPSDRTSTTGFILYLGKVPISWSSKKQRTVARSSTEAEYRA 663
+ + YS++D+ D ST+G+I L ISW S KQ +A S+ A++ A
Sbjct: 653 YRRVDNLEVVGYSNSDFNGCSDDCKSTSGYIFMLTGGAISWKSVKQSLIAFSTMYAKFVA 712
Query: 664 VASTASEVKWVTSLLRELGQEVDTP----VIYCDNISTMYTCQNLVFHTRMKHLEIDIHF 719
+S+V W+ L+ EL Q VD+ VIYCDN +T++ +N T KH+EI
Sbjct: 713 CYGASSQVVWLRKLISEL-QVVDSIFRPIVIYCDNNATVFYSKNNKISTSSKHMEIKYLI 771
Query: 720 VREMVQRGEIRVTHISSKDQLAD-ITKSLSKVKFQQN-----RAKIGIH 762
V+++V++ +I + HI ++ LAD +TK L + F+++ R++IG H
Sbjct: 772 VKDLVKKEDIVIKHIRTESMLADPLTKGLKPIMFKEHVVNMGRSRIGCH 820
>GSVIVT01028343001 assembled CDS
Length = 2295
Score = 120 bits (300), Expect = 4e-27, Method: Composition-based stats.
Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 4/141 (2%)
Query: 626 DRTSTTGFILYLGKVPISWSSKKQRTVARSSTEAEYRAVASTASEVKWVTSLLREL--GQ 683
DR ST+G+ +++G ISW SKKQ VARSS EAEYRA+A E+ W+ LL+EL G+
Sbjct: 1466 DRRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRFGK 1525
Query: 684 EVDTPVIYCDNISTMYTCQNLVFHTRMKHLEIDIHFVREMVQRGEIRVTHISSKDQLADI 743
+ +I CDN + ++ N VFH R KH+E+D HF+RE + G + + ++S DQLADI
Sbjct: 1526 DEQMKLI-CDNQAALHIASNPVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADI 1584
Query: 744 -TKSLSKVKFQQNRAKIGIHN 763
TKSL + + K+G ++
Sbjct: 1585 FTKSLRGPRIKYICNKLGAYD 1605
>GSVIVT01024357001 assembled CDS
Length = 851
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 132/292 (45%), Gaps = 21/292 (7%)
Query: 23 HTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAFRTAAYLINRLPTYLLKLVSPYE 82
+TPQ NG ER+++ ++E +L LP FW A T YL+NR PT L + E
Sbjct: 514 YTPQQNGVVERKNQTVMEMAKAMLYEKGLPKFFWVEAVNTVVYLLNRCPTKALLNKTLIE 573
Query: 83 KLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPCVFLGYSPNKSAYLCYHIESGKI 142
G+NP+ +VF CLCY + ++K D S C+F+GYS Y Y++++ K+
Sbjct: 574 AWSGRNPSVRHFKVFGCLCYSQVPKERRSKLDETSEKCIFMGYSSQSKGYRLYNLKTNKL 633
Query: 143 FESHHVEFVENKFPFSDKNSATDLSETSWYDFATEPVTSIVPFLSSNMSVDESISSSTAP 202
S +V F E + +W T +V L V E+ + ST+
Sbjct: 634 IISRYVIFYEK-------------AAWNWEKGKILKKTILVDELQIKTPV-ETGNGSTST 679
Query: 203 VSLSPTPIESMPPSVDIQSFPTPVNLHRMVTRSKNNIFKPKVXNSVTKHXXXXXXXXXXV 262
S +P S+P S +S + + R ++ + V K
Sbjct: 680 SSPQDSP-RSVPLSSSTESPTSSSSSPSSTPRKMRSL------SDVYKRCNLCIVEPQSF 732
Query: 263 KQALAIPDWRQAMTSEFNALLDNNTWVLVPYDSAYNLVSCKWIFRVKKNADG 314
++A+ DWR+AM E + + N TW LV ++ KWI+RVK ++DG
Sbjct: 733 EEAIKDEDWRKAMEKEIDVIEKNETWQLVEKPIDKEIIGVKWIYRVKCHSDG 784
>GSVIVT01028612001 assembled CDS
Length = 3048
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 1/169 (0%)
Query: 14 GINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAFRTAAYLINRLPTY 73
GI + +TPQ NG AER++R ++ ++L LP +FW A +++NR PT+
Sbjct: 600 GIRRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSAKKLPKTFWPEAVNWTVHVLNRSPTF 659
Query: 74 LLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPCVFLGYSPNKSAYL 133
++ +P E P+ RVF CL + + + K D++S CV LG S AY
Sbjct: 660 AVQNKTPEEAWGKLKPSVDYFRVFGCLSHVHVPDSKRTKLDDKSFSCVLLGVSEESKAYR 719
Query: 134 CYHIESGKIFESHHVEFVENK-FPFSDKNSATDLSETSWYDFATEPVTS 181
Y S KI S V F E+K + + K + + W D E +
Sbjct: 720 LYDPISQKIIISRDVVFEEDKNWDWDKKYEEAIVCDLEWGDDGEEATVN 768
>GSVIVT01014104001 assembled CDS
Length = 1354
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Query: 8 KYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSFAFRTAAYLI 67
K+ ++ GI + P TPQ NG AERR+R L+E +++ +S+P+S W A +TA Y++
Sbjct: 952 KFLEKHGIRAQYTMPGTPQQNGVAERRNRTLMEMVRSMMSYSSVPISLWGEALKTAMYIL 1011
Query: 68 NRLPTYLLKLVSPYEKLVGQNPNYTSLRVFECLCYPCLRPYMKNKFDNRSLPCVFLGYSP 127
NR+P+ + +P+E G+ P+ + ++ C + + K D+R++ F+GY P
Sbjct: 1012 NRVPSKAVP-KTPFELWTGRKPSLRHIHIWGCPAEARIYNPHEKKLDSRTVSGYFIGY-P 1069
Query: 128 NKSAYLCYHI--ESGKIFESHHVEFVEN-KFPFSDKNSATDLSE 168
+KS ++ S +I E+ + F+EN + S++ D+ E
Sbjct: 1070 DKSKGYRFYCPNHSVRIVETGNARFLENGEISGSNEPRKVDIEE 1113
>GSVIVT01013341001 assembled CDS
Length = 503
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 60/106 (56%)
Query: 576 MQHPNADHWLALKRLLRYLKSTIYYGISIIKQADFGFHAYSDADWASDPSDRTSTTGFIL 635
M P H + ++L+YLK T G+ K F A++DADWA DR ST+G+
Sbjct: 1 MHSPYEAHMNVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCT 60
Query: 636 YLGKVPISWSSKKQRTVARSSTEAEYRAVASTASEVKWVTSLLREL 681
++ I+W SKKQ VARSS E ++R++A EV W+ +L EL
Sbjct: 61 FVFGNLITWRSKKQNVVARSSAEVKFRSIAHGICEVLWIKRVLEEL 106
>GSVIVT01010555001 assembled CDS
Length = 147
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 366 LDVNNAFLHGPLTEDVYMQQPPGFKDPTKPTHVCKLIKALYGLKQAPRAXYQALRAFTVA 425
+DV NAFL+G L+E+VYMQ PPG + VC L +ALYGLKQAPRA + +
Sbjct: 1 MDVKNAFLNGDLSEEVYMQPPPGLS--VESNKVCHLRRALYGLKQAPRAWFAKFSSTIFR 58
Query: 426 YGFRLSACDHSLFYYIKDGVYCYFLIYVD 454
G+ S D +LF D L+Y +
Sbjct: 59 LGYTASPYDSALFLRRTDKGTILLLLYSN 87
>GSVIVT01015960001 assembled CDS
Length = 1205
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 673 WVTSLLRELGQEVDTPV-IYCDNISTMYTCQNLVFHTRMKHLEIDIHFVREMVQRGEIRV 731
W+ LL EL +P+ +YCDN + + N V H R KH+E+D HF++E + G + +
Sbjct: 2 WIRRLLEELKMTGSSPMKLYCDNKAVISVAYNPVLHDRTKHVEVDKHFIKEKIDNGLVCM 61
Query: 732 THISSKDQLADI-TKSLSKVKF 752
T+I +++Q+AD+ TK L K +F
Sbjct: 62 TYIPTEEQVADVFTKGLHKRQF 83
>GSVIVT01034745001 assembled CDS
Length = 2196
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 1 GEYVA--LKKYFQQQGINHLQSPPHTPQHNGAAERRHRHLVETGLTLLQTASLPMSFWSF 58
GEY++ L + Q+ GI H P++PQ NG ER++R ++E +L LP W+
Sbjct: 596 GEYISKELNVFCQEAGIVHQLIAPYSPQQNGVFERKNRTVMEMARCMLFEKKLPKLLWAE 655
Query: 59 AFRTAAYLINRLPT 72
A T+ YL+NRLPT
Sbjct: 656 AVNTSVYLLNRLPT 669
>GSVIVT01018138001 assembled CDS
Length = 98
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 424 VAYGFRLSACDHSLFYYIKDGVYCYFLIYVDDIVITGNNNGFVQSFVQALGKRFSLKDPQ 483
+++GF + D SLF Y +YVDDI++T ++ + S + L +FSLKD
Sbjct: 14 LSFGFVSTKSDQSLFLRFTPSHITYVFVYVDDILVTSSDTTAITSLIAQLNSKFSLKDLG 73
Query: 484 PLSLFLGMDVRQINGGIFSTQHHYI 508
+ FL + V N G+ +Q YI
Sbjct: 74 EVHYFLVIQVSYTNNGLHLSQTKYI 98