Jatropha Genome Database

JcCB0036391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0036391.10 + phase: 0 /pseudo
         (461 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018057001 assembled CDS                                       580   e-166
GSVIVT01009876001 assembled CDS                                       577   e-165

>GSVIVT01018057001 assembled CDS
          Length = 358

 Score =  580 bits (1495), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 274/301 (91%), Positives = 284/301 (94%)

Query: 159 TIRRLQF*TIYKHPKEERIARTWGTTAPGLPYVEETIKKSGNWLIGGDLEVIEPIKYHDG 218
           TI  L    IYKH KEERIARTWGTTAPGLPYV++ I  SGNWLIGGDLEV+EP+KY+DG
Sbjct: 56  TIAILSSIEIYKHHKEERIARTWGTTAPGLPYVDQAITNSGNWLIGGDLEVVEPVKYNDG 115

Query: 219 LDRFRLSPAELRKEFTKRNADAVFAFQLRNPVHNGHALLMTDTRKRLLEMGYKNPVLLLH 278
           LDRFRLSPAELR+EFTKRNADAVFAFQLRNPVHNGHALLMTDTR+RLLEMGYKNPVLLLH
Sbjct: 116 LDRFRLSPAELREEFTKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYKNPVLLLH 175

Query: 279 PLGGYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARIN 338
           PLGGYTKADDVPL WRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARIN
Sbjct: 176 PLGGYTKADDVPLGWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARIN 235

Query: 339 AGANFYIVGRDPAGMSHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKM 398
           AGANFYIVGRDPAGM HPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQ KM
Sbjct: 236 AGANFYIVGRDPAGMGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQNKM 295

Query: 399 AFFDPTRPQDFLFISGTKMRTLAKNKENPPDGFMCPGGWNVLVEYYDSLAPADNGKVPEP 458
           AFFDP+R QDFLFISGTKMRTLAKNKENPPDGFMCPGGW VLVEYYDSL P++NGKVPE 
Sbjct: 296 AFFDPSRAQDFLFISGTKMRTLAKNKENPPDGFMCPGGWEVLVEYYDSLVPSNNGKVPET 355

Query: 459 V 459
           V
Sbjct: 356 V 356


>GSVIVT01009876001 assembled CDS
          Length = 483

 Score =  577 bits (1487), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 287/419 (68%), Positives = 324/419 (77%), Gaps = 14/419 (3%)

Query: 50  LIEPDGGKLVELFVDKSQKDVRRKEAISLPKITLTKIDRQWVHVLSXGWASPLSGFMRES 109
           LIEPDGG LV+  V +S++  +  EA S+PK+ LT+ID +WVHV+S GWASPL GFMRE 
Sbjct: 70  LIEPDGGALVDRVVPESERAAKALEAESMPKVGLTQIDLEWVHVISEGWASPLKGFMRED 129

Query: 110 RVPPKLFILMPSVSKTGRLLTCRCRLC------SPSTICRSN--GSASPKGSLSSILTIR 161
                L      + K G ++     +       +   I  S   G   P G L  IL  R
Sbjct: 130 EYLQSLHFNCIRM-KDGTIVNMSLPIVLAIDDEAKERIGASQDVGLVGPTGDLVGIL--R 186

Query: 162 RLQF*TIYKHPKEERIARTWGTTAPGLPYVEETIKKSGNWLIGGDLEVIEPIKYHDGLDR 221
            ++   IYKH KEER+ARTWGTTAPGLPYVEE I  +GNWLIGGDLEV++PIKY+DGLD 
Sbjct: 187 SIE---IYKHNKEERVARTWGTTAPGLPYVEEVITPAGNWLIGGDLEVLKPIKYNDGLDH 243

Query: 222 FRLSPAELRKEFTKRNADAVFAFQLRNPVHNGHALLMTDTRKRLLEMGYKNPVLLLHPLG 281
           +RLSP +LRKEF KR ADAVFAFQLRNPVHNGHALLM DTR+RLLEMGYKNP+LLLHPLG
Sbjct: 244 YRLSPQQLRKEFDKRQADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGYKNPILLLHPLG 303

Query: 282 GYTKADDVPLSWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGA 341
           GYTKADDVPL  RM+QH KVLEDGVLDPETT+V+IFPSPMHYAGPTEVQWHAK RINAGA
Sbjct: 304 GYTKADDVPLDVRMEQHSKVLEDGVLDPETTIVAIFPSPMHYAGPTEVQWHAKGRINAGA 363

Query: 342 NFYIVGRDPAGMSHPVEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFF 401
           NFYIVGRDPAGM HP EKRDLYD DHGKKVLSMAPGLE+LNILPF+VAAYD    KMAFF
Sbjct: 364 NFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFRVAAYDTVGKKMAFF 423

Query: 402 DPTRPQDFLFISGTKMRTLAKNKENPPDGFMCPGGWNVLVEYYDSLAPADNGKVPEPVS 460
           DP+R +DFLFISGTKMRT A+N ENPPDGFMCP GW+VLV YY+SL   D  +    VS
Sbjct: 424 DPSRAKDFLFISGTKMRTYARNGENPPDGFMCPQGWSVLVRYYESLQAEDTTQQSAVVS 482