Jatropha Genome Database

JcCB0035141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0035141.10 - phase: 0 /partial
         (561 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009858001 assembled CDS                                       228   8e-60
GSVIVT01020054001 assembled CDS                                        53   5e-07

>GSVIVT01009858001 assembled CDS
          Length = 502

 Score =  228 bits (580), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 135/242 (55%), Positives = 165/242 (68%), Gaps = 17/242 (7%)

Query: 129 SDAKESSIDIK---SLPNQNMQSNENYQMEINSH---------FHKAEIEGE----ETDQ 172
           S+ +  SI IK   S PN   Q  E + M ++S            K E+E E    E++Q
Sbjct: 224 SNPRTKSIHIKCDPSRPNSGWQWLERW-MSVSSSNLGQPQIPVLEKEELEHERSEMESEQ 282

Query: 173 PKRSMKRNASEQLETEGKRFVFGSRKIGNPAFIAVQSKFEELSSTANSNKSFSLSYQDGA 232
           PKRS+KR ASEQLETEGK+FVFGSRK+ NPAF+A QSKFEELSSTANS +  S S+QD  
Sbjct: 283 PKRSVKRFASEQLETEGKKFVFGSRKVSNPAFVAAQSKFEELSSTANSGRLISPSHQDVG 342

Query: 233 VESNMDTISSGADTVVRTKELNLVGNSVPNNLRGQCGDSECGTELSVTSTLDSPDIFEVG 292
           VESN++T+SS ADT + TK+LN   NS+P N R Q G SECGTELS+TSTLDSPDI EVG
Sbjct: 343 VESNIETVSSAADTSITTKDLNSEDNSIPPNSRLQVGGSECGTELSITSTLDSPDISEVG 402

Query: 293 ATEYEHEAKSSEKETYNRNSTIDVVVEAKDVPTDPVSNPFDYLMVQPEKLDTVKDESVDS 352
           A E+++EAK SE+   N NST  + VE+KDV T  VSN  D ++  PEK D V  E V+S
Sbjct: 403 AMEFDNEAKVSEEVICNLNSTGGLDVESKDVSTIAVSNLSDTMLAPPEKRDAVNGEPVNS 462

Query: 353 VV 354
           VV
Sbjct: 463 VV 464



 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%), Gaps = 2/53 (3%)

Query: 1   MESTPKSRPIHIKCDSSKPSSAWNWLERWISVSSA-APTPQ-PNLKTEEVERE 51
           +ES P+++ IHIKCD S+P+S W WLERW+SVSS+    PQ P L+ EE+E E
Sbjct: 222 LESNPRTKSIHIKCDPSRPNSGWQWLERWMSVSSSNLGQPQIPVLEKEELEHE 274


>GSVIVT01020054001 assembled CDS
          Length = 578

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 50/93 (53%), Gaps = 9/93 (9%)

Query: 457 DQKNGKRRNSFGSSRPDNTDQEARDXXXXXXLPHFMQATESARAKIQANNSPRSSPDVHD 516
           DQK  +RR S     P   D +         LP +M ATESA+AK++A +SPR   D  D
Sbjct: 462 DQKTSQRRASL----PGKHDYQENGLHNTPRLPSYMAATESAKAKLRALSSPRFGQDEAD 517

Query: 517 REYIKKRQSLPGS--NGRQS--SPSIQRSLSQA 545
           +  I +R SLP S  NG+ S  SP  QR L QA
Sbjct: 518 KNGITRRHSLPSSSTNGKLSSWSPRAQR-LVQA 549