Jatropha Genome Database

JcCB0035061.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0035061.20 + phase: 0 
         (285 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019305001 assembled CDS                                       367   e-102
GSVIVT01025727001 assembled CDS                                       140   5e-34

>GSVIVT01019305001 assembled CDS
          Length = 309

 Score =  367 bits (942), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/249 (69%), Positives = 210/249 (84%), Gaps = 3/249 (1%)

Query: 35  AKELRSTDLVAMEYADLNLSHI-ISGELGHVRVRQHVNPLSSSFSVPARIPDWKEVFRDP 93
           AK+L S +LVA+EYADLNL++  +S E+GHVR+RQHVNP + SFS+PA +P+W +VF+D 
Sbjct: 61  AKQLTSPELVALEYADLNLNYDNVSQEVGHVRIRQHVNPFAPSFSIPAPVPNWCQVFKDS 120

Query: 94  TLPLMVDIGSGSGRFLIWLAKRNRNIGNYLGIEIRQKMQLVNRAEHWIKELALDNLHFLF 153
           TLPLMVDIGSGSGRFL+WLAKRN +  NYLG+EIRQK  L  RAE W+KEL+L N+HF+F
Sbjct: 121 TLPLMVDIGSGSGRFLMWLAKRNPDSQNYLGLEIRQK--LAKRAEFWVKELSLHNIHFMF 178

Query: 154 ANATVSFRQLVVGYPGPLMFVSILCPDPXXXXXXXXXXVVQKPLVDSIINNLAPGGKVFV 213
           ANAT+SF++LV  YPGPLM VS+LCPDP          VVQKPLVDSI+ NL PGG+VF+
Sbjct: 179 ANATISFKELVSAYPGPLMLVSLLCPDPHFKKRHHKRRVVQKPLVDSIVKNLMPGGQVFI 238

Query: 214 QSDVLEVALDMRNQFDAESDMLRHIDETDLSMLCDKDGWLLNNPMGIRTEREIHAEFEGA 273
           QSDVLEVA+DMR++FDAESD+L+HID  D SM CD++GWL+ NPMGIRTEREIHAEFEGA
Sbjct: 239 QSDVLEVAVDMRDRFDAESDLLQHIDTIDPSMQCDEEGWLVKNPMGIRTEREIHAEFEGA 298

Query: 274 KIYRRLYQK 282
           KIYRRLYQK
Sbjct: 299 KIYRRLYQK 307


>GSVIVT01025727001 assembled CDS
          Length = 581

 Score =  140 bits (354), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 76/200 (38%), Positives = 115/200 (57%), Gaps = 3/200 (1%)

Query: 85  DWKEVFRDPTLPLMVDIGSGSGRFLIWLAKRNRNIGNYLGIEIRQKMQLVNRAEHWIKEL 144
           DW   +  P+ PL+VDIGSG+G FL+ +AKR  ++ N+LG+EI +K  LV R    + + 
Sbjct: 382 DWNAAYSHPSQPLVVDIGSGNGLFLLAMAKRREDL-NFLGLEINEK--LVRRCLDCVHQY 438

Query: 145 ALDNLHFLFANATVSFRQLVVGYPGPLMFVSILCPDPXXXXXXXXXXVVQKPLVDSIINN 204
            + N +F+  NAT +FR +V  YPG L+ VSI CP+P          ++Q+ LV+++ + 
Sbjct: 439 GIMNGYFIATNATSTFRSIVSSYPGDLVLVSIQCPNPDFNKPEHRWRMLQRSLVEAVADL 498

Query: 205 LAPGGKVFVQSDVLEVALDMRNQFDAESDMLRHIDETDLSMLCDKDGWLLNNPMGIRTER 264
           LA  GKVF+QSD+  VA+ M+  F         +   +     D+ GWL  NP G+R++ 
Sbjct: 499 LASDGKVFLQSDIEAVAVRMKEHFLKYGKGKLSVVHNEDCTETDRKGWLKENPFGVRSDW 558

Query: 265 EIHAEFEGAKIYRRLYQKRT 284
           E H    GA +YR +  K T
Sbjct: 559 EQHVVDRGAPMYRLMLSKST 578