Jatropha Genome Database

JcCB0035061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0035061.10 - phase: 0 /pseudo
         (220 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019324001 assembled CDS                                       273   7e-74

>GSVIVT01019324001 assembled CDS
          Length = 310

 Score =  273 bits (697), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 139/202 (68%), Positives = 154/202 (76%), Gaps = 7/202 (3%)

Query: 3   MALALSY------FHFRTHCSFSSAFSSPTIRPAVILPGLGNNTADYQKLEVTLKEYGVP 56
           MA+AL+       F F T C  SS   + T RPAVILPGLGNN+ DY KLE+TLKEYGV 
Sbjct: 1   MAVALASVDHSFNFRFPTFCC-SSKPPTTTYRPAVILPGLGNNSGDYHKLELTLKEYGVA 59

Query: 57  TVVAKVSRFDWFRNAAGLVDPNYWRGTLQPRPVLDWYMKRIQEAVNEAKELAQGGTLSLI 116
           +VVAKVSR DW RNAAGLVDPNYWRGTL PRPVLDWY+KR+ EAV EAK+L QGGTLSLI
Sbjct: 60  SVVAKVSRLDWLRNAAGLVDPNYWRGTLTPRPVLDWYLKRVDEAVQEAKQLTQGGTLSLI 119

Query: 117 GHSAGGWLARVYMEEFGLSDISXXXXXXXXXXXXXKGVPGVIDQTRGLLYYVEEHCAKAV 176
           GHSAGGWLARVYMEEFG+S IS             KG+PGVIDQTRGLL YVE++C+KAV
Sbjct: 120 GHSAGGWLARVYMEEFGVSQISLLLTLGTPHLPPPKGMPGVIDQTRGLLDYVEKNCSKAV 179

Query: 177 YNPQLKYVCIAGRXSQILKLLA 198
           Y PQLKYVCIAGR  Q  +L  
Sbjct: 180 YTPQLKYVCIAGRYIQGARLFG 201